Browse through the Pfam families on this page.
Home
0-9
A
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
Q
R
S
T
U
V
W
X
Y
Z
| R-HINP1I | PF11463.3 | R.HinP1I restriction endonuclease |
| R3H | PF01424.17 | R3H domain |
| R3H-assoc | PF13902.1 | R3H-associated N-terminal domain |
| RA | PF00788.18 | Ras association (RalGDS/AF-6) domain |
| Rab15_effector | PF15208.1 | Rab15 effector |
| Rab3-GTPase_cat | PF13890.1 | Rab3 GTPase-activating protein catalytic subunit |
| RAB3GAP2_C | PF14656.1 | Rab3 GTPase-activating protein regulatory subunit C-terminus |
| RAB3GAP2_N | PF14655.1 | Rab3 GTPase-activating protein regulatory subunit N-terminus |
| Rab5-bind | PF09311.6 | Rabaptin-like protein |
| Rab5ip | PF07019.7 | Rab5-interacting protein (Rab5ip) |
| Rabaptin | PF03528.10 | Rabaptin |
| RabGAP-TBC | PF00566.13 | Rab-GTPase-TBC domain |
| RabGGT_insert | PF07711.6 | Rab geranylgeranyl transferase alpha-subunit, insert domain |
| Rab_eff_C | PF04698.7 | Rab effector MyRIP/melanophilin C-terminus |
| Rac1 | PF09632.5 | Rac1-binding domain |
| Racemase_4 | PF13615.1 | Putative alanine racemase |
| Rad1 | PF02144.11 | Repair protein Rad1/Rec1/Rad17 |
| Rad10 | PF03834.9 | Binding domain of DNA repair protein Ercc1 (rad10/Swi10) |
| Rad17 | PF03215.10 | Rad17 cell cycle checkpoint protein |
| Rad21_Rec8 | PF04824.11 | Conserved region of Rad21 / Rec8 like protein |
| Rad21_Rec8_N | PF04825.8 | N terminus of Rad21 / Rec8 like protein |
| Rad33 | PF08730.5 | Rad33 |
| Rad4 | PF03835.10 | Rad4 transglutaminase-like domain |
| Rad50_zn_hook | PF04423.9 | Rad50 zinc hook motif |
| Rad51 | PF08423.6 | Rad51 |
| Rad52_Rad22 | PF04098.10 | Rad52/22 family double-strand break repair protein |
| Rad54_N | PF08658.5 | Rad54 N terminal |
| Rad60-SLD | PF11976.3 | Ubiquitin-2 like Rad60 SUMO-like |
| Rad60-SLD_2 | PF13881.1 | Ubiquitin-2 like Rad60 SUMO-like |
| Rad9 | PF04139.8 | Rad9 |
| Rad9_Rad53_bind | PF08605.5 | Fungal Rad9-like Rad53-binding |
| RadC | PF04002.10 | RadC-like JAB domain |
| Radial_spoke | PF04712.7 | Radial spokehead-like protein |
| Radial_spoke_3 | PF06098.6 | Radial spoke protein 3 |
| Radical_SAM | PF04055.16 | Radical SAM superfamily |
| Radical_SAM_N | PF08497.5 | Radical SAM N-terminal |
| Raffinose_syn | PF05691.7 | Raffinose synthase or seed imbibition protein Sip1 |
| Raftlin | PF15250.1 | Raftlin |
| RAG1 | PF12940.2 | Recombination-activation protein 1 (RAG1) |
| RAG2 | PF03089.9 | Recombination activating protein 2 |
| RAG2_PHD | PF13341.1 | RAG2 PHD domain |
| RAI1 | PF08652.6 | RAI1 like PD-(D/E)XK nuclease |
| RAI16-like | PF10257.4 | Retinoic acid induced 16-like protein |
| Ral | PF11058.3 | Antirestriction protein Ral |
| RALF | PF05498.6 | Rapid ALkalinization Factor (RALF) |
| RAM | PF15320.1 | mRNA cap methylation, RNMT-activating mini protein |
| RAMP | PF04901.8 | Receptor activity modifying family |
| RAMP4 | PF06624.7 | Ribosome associated membrane protein RAMP4 |
| RAMPs | PF03787.10 | RAMP superfamily |
| Ran-binding | PF05508.6 | RanGTP-binding protein |
| RanGAP1_C | PF07834.6 | RanGAP1 C-terminal domain |
| Ran_BP1 | PF00638.13 | RanBP1 domain |
| RAP | PF08373.5 | RAP domain |
| RAP-1 | PF03085.10 | Rhoptry-associated protein 1 (RAP-1) |
| RAP1 | PF07218.6 | Rhoptry-associated protein 1 (RAP-1) |
| Rap1-DNA-bind | PF09197.5 | Rap1, DNA-binding |
| Rap1_C | PF11626.3 | TRF2-interacting telomeric protein/Rap1 - C terminal domain |
| Rapamycin_bind | PF08771.6 | Rapamycin binding domain |
| RapA_C | PF12137.3 | RNA polymerase recycling family C-terminal |
| Rapsyn_N | PF10579.4 | Rapsyn N-terminal myristoylation and linker region |
| Raptor_N | PF14538.1 | Raptor N-terminal CASPase like domain |
| Rap_GAP | PF02145.10 | Rap/ran-GAP |
| Ras | PF00071.17 | Ras family |
| RasGAP | PF00616.14 | GTPase-activator protein for Ras-like GTPase |
| RasGAP_C | PF03836.10 | RasGAP C-terminus |
| RasGEF | PF00617.14 | RasGEF domain |
| RasGEF_N | PF00618.15 | RasGEF N-terminal motif |
| RasGEF_N_2 | PF14663.1 | Rapamycin-insensitive companion of mTOR RasGEF_N domain |
| Ras_bdg_2 | PF14847.1 | Ras-binding domain of Byr2 |
| Rav1p_C | PF12234.3 | RAVE protein 1 C terminal |
| Rax2 | PF12768.2 | Cortical protein marker for cell polarity |
| RBB1NT | PF08169.6 | RBB1NT (NUC162) domain |
| RbcS | PF12338.3 | Ribulose-1,5-bisphosphate carboxylase small subunit |
| RBD | PF02196.10 | Raf-like Ras-binding domain |
| RBD-FIP | PF09457.5 | FIP domain |
| RBDV_coat | PF06593.6 | Raspberry bushy dwarf virus coat protein |
| RBFA | PF02033.13 | Ribosome-binding factor A |
| RBM1CTR | PF08081.6 | RBM1CTR (NUC064) family |
| RBM39linker | PF15519.1 | linker between RRM2 and RRM3 domains in RBM39 protein |
| RBP_receptor | PF14752.1 | Retinol binding protein receptor |
| RbsD_FucU | PF05025.8 | RbsD / FucU transport protein family |
| Rbsn | PF11464.3 | Rabenosyn Rab binding domain |
| RB_A | PF01858.12 | Retinoblastoma-associated protein A domain |
| RB_B | PF01857.15 | Retinoblastoma-associated protein B domain |
| Rb_C | PF08934.5 | Rb C-terminal domain |
| RC-P840_PscD | PF10657.4 | Photosystem P840 reaction centre protein PscD |
| RcbX | PF02341.10 | RbcX protein |
| RCC1 | PF00415.13 | Regulator of chromosome condensation (RCC1) repeat |
| RCC1_2 | PF13540.1 | Regulator of chromosome condensation (RCC1) repeat |
| RCC_reductase | PF06405.6 | Red chlorophyll catabolite reductase (RCC reductase) |
| Rcd1 | PF04078.8 | Cell differentiation family, Rcd1-like |
| RCR | PF12273.3 | Chitin synthesis regulation, resistance to Congo red |
| RcsC | PF09456.5 | RcsC Alpha-Beta-Loop (ABL) |
| RCSD | PF05177.7 | RCSD region |
| RD3 | PF14473.1 | RD3 protein |
| RDD | PF06271.7 | RDD family |
| RdgC | PF04381.7 | Putative exonuclease, RdgC |
| RDM | PF11002.3 | RFPL defining motif (RDM) |
| RdRP | PF05183.7 | RNA dependent RNA polymerase |
| RdRP_1 | PF00680.15 | RNA dependent RNA polymerase |
| RdRP_2 | PF00978.16 | RNA dependent RNA polymerase |
| RdRP_3 | PF00998.18 | Viral RNA dependent RNA polymerase |
| RdRP_4 | PF02123.11 | Viral RNA-directed RNA-polymerase |
| RdRP_5 | PF07925.6 | Reovirus RNA-dependent RNA polymerase lambda 3 |
| RDV-p3 | PF09231.5 | Rice dwarf virus p3 |
| Rdx | PF10262.4 | Rdx family |
| RebB | PF11747.3 | Killing trait |
| REC114-like | PF15165.1 | Meiotic recombination protein REC114-like |
| RecA | PF00154.16 | recA bacterial DNA recombination protein |
| Receptor_2B4 | PF11465.3 | Natural killer cell receptor 2B4 |
| Receptor_IA-2 | PF11548.3 | Protein-tyrosine phosphatase receptor IA-2 |
| Recep_L_domain | PF01030.19 | Receptor L domain |
| Recombinase | PF07508.8 | Recombinase |
| RecO_C | PF02565.10 | Recombination protein O C terminal |
| RecO_N | PF11967.3 | Recombination protein O N terminal |
| RecO_N_2 | PF13114.1 | RecO N terminal |
| RecQ5 | PF06959.6 | RecQ helicase protein-like 5 (RecQ5) |
| RecR | PF02132.10 | RecR protein |
| RecT | PF03837.9 | RecT family |
| RecU | PF03838.9 | Recombination protein U |
| RecX | PF02631.11 | RecX family |
| Red1 | PF07964.6 | Rec10 / Red1 |
| Redoxin | PF08534.5 | Redoxin |
| Reductase_C | PF14759.1 | Reductase C-terminal |
| RED_C | PF07807.6 | RED-like protein C-terminal region |
| RED_N | PF07808.8 | RED-like protein N-terminal region |
| Reeler | PF02014.11 | Reeler domain |
| REF | PF05755.7 | Rubber elongation factor protein (REF) |
| REGB_T4 | PF10715.4 | Endoribonuclease RegB T4-bacteriophage encoded |
| Regulator_TrmB | PF11495.3 | Archaeal transcriptional regulator TrmB |
| Reg_prop | PF07494.6 | Two component regulator propeller |
| REJ | PF02010.10 | REJ domain |
| Relaxase | PF03432.9 | Relaxase/Mobilisation nuclease domain |
| RelA_SpoT | PF04607.12 | Region found in RelA / SpoT proteins |
| RelB | PF04221.7 | RelB antitoxin |
| RelB_N | PF12910.2 | Antitoxin of toxin-antitoxin stability system N-terminal |
| RELT | PF12606.3 | Tumour necrosis factor receptor superfamily member 19 |
| Remorin_C | PF03763.8 | Remorin, C-terminal region |
| Remorin_N | PF03766.8 | Remorin, N-terminal region |
| Renin_r | PF07850.9 | Renin receptor-like protein |
| Reoviridae_Vp9 | PF08978.5 | Reoviridae VP9 |
| Reovirus_cap | PF00979.12 | Reovirus outer capsid protein, Sigma 3 |
| Reovirus_L2 | PF06016.6 | Reovirus core-spike protein lambda-2 (L2) |
| Reovirus_M2 | PF05993.7 | Reovirus major virion structural protein Mu-1/Mu-1C (M2) |
| Reovirus_Mu2 | PF07781.6 | Reovirus minor core protein Mu-2 |
| Reo_P9 | PF06043.6 | Reovirus P9-like family |
| Reo_sigma1 | PF01664.11 | Reovirus viral attachment protein sigma 1 |
| Reo_sigmaC | PF04582.7 | Reovirus sigma C capsid protein |
| Rep-A_N | PF04057.7 | Replication factor-A protein 1, N-terminal domain |
| RepA1_leader | PF08048.7 | Tap RepA1 leader peptide |
| RepA_C | PF04796.7 | Plasmid encoded RepA protein |
| RepA_N | PF06970.6 | Replication initiator protein A (RepA) N-terminus |
| RepB | PF07506.6 | RepB plasmid partitioning protein |
| RepB-RCR_reg | PF10723.4 | Replication regulatory protein RepB |
| RepC | PF06504.6 | Replication protein C (RepC) |
| RepL | PF05732.6 | Firmicute plasmid replication protein (RepL) |
| Replicase | PF03090.12 | Replicase family |
| Replic_Relax | PF13814.1 | Replication-relaxation |
| Repressor_Mnt | PF11423.3 | Regulatory protein Mnt |
| Reprolysin | PF01421.14 | Reprolysin (M12B) family zinc metalloprotease |
| Reprolysin_2 | PF13574.1 | Metallo-peptidase family M12B Reprolysin-like |
| Reprolysin_3 | PF13582.1 | Metallo-peptidase family M12B Reprolysin-like |
| Reprolysin_4 | PF13583.1 | Metallo-peptidase family M12B Reprolysin-like |
| Reprolysin_5 | PF13688.1 | Metallo-peptidase family M12 |
| Rep_1 | PF01446.12 | Replication protein |
| Rep_2 | PF01719.12 | Plasmid replication protein |
| Rep_3 | PF01051.16 | Initiator Replication protein |
| Rep_4 | PF05797.6 | Yeast trans-acting factor (REP1/REP2) |
| Rep_fac-A_3 | PF08661.6 | Replication factor A protein 3 |
| Rep_fac-A_C | PF08646.5 | Replication factor-A C terminal domain |
| Rep_fac_C | PF08542.6 | Replication factor C C-terminal domain |
| Rep_N | PF08724.5 | Rep protein catalytic domain like |
| Rep_Org_C | PF06926.6 | Putative replisome organiser protein C-terminus |
| Rep_trans | PF02486.14 | Replication initiation factor |
| Requiem_N | PF14051.1 | N-terminal domain of DPF2/REQ. |
| Rer1 | PF03248.8 | Rer1 family |
| RES | PF08808.6 | RES domain |
| ResB | PF05140.9 | ResB-like family |
| ResIII | PF04851.10 | Type III restriction enzyme, res subunit |
| Resistin | PF06954.6 | Resistin |
| Resolvase | PF00239.16 | Resolvase, N terminal domain |
| RESP18 | PF14948.1 | RESP18 domain |
| Response_reg | PF00072.19 | Response regulator receiver domain |
| RestrictionMunI | PF11407.3 | Type II restriction enzyme MunI |
| RestrictionSfiI | PF11487.3 | Type II restriction enzyme SfiI |
| Reticulon | PF02453.12 | Reticulon |
| Retinal | PF15449.1 | Retinal protein |
| Retinin_C | PF04527.7 | Drosophila Retinin like protein |
| Retrotrans_gag | PF03732.12 | Retrotransposon gag protein |
| Retro_M | PF02813.9 | Retroviral M domain |
| Ret_tiss | PF10044.4 | Retinal tissue protein |
| REV | PF00424.13 | REV protein (anti-repression trans-activator protein) |
| RE_AccI | PF09545.5 | AccI restriction endonuclease |
| RE_Alw26IDE | PF09665.5 | Type II restriction endonuclease (RE_Alw26IDE) |
| RE_AlwI | PF09491.5 | AlwI restriction endonuclease |
| RE_ApaLI | PF09499.5 | ApaLI-like restriction endonuclease |
| RE_Bpu10I | PF09549.5 | Bpu10I restriction endonuclease |
| RE_Bsp6I | PF09504.5 | Bsp6I restriction endonuclease |
| RE_BstXI | PF09552.5 | BstXI restriction endonuclease |
| RE_CfrBI | PF09516.5 | CfrBI restriction endonuclease |
| RE_Eco29kI | PF09517.5 | Eco29kI restriction endonuclease |
| RE_Eco47II | PF09553.5 | Eco47II restriction endonuclease |
| RE_EcoO109I | PF14511.1 | Type II restriction endonuclease EcoO109I |
| RE_HaeII | PF09554.5 | HaeII restriction endonuclease |
| RE_HaeIII | PF09556.5 | HaeIII restriction endonuclease |
| RE_HindIII | PF09518.5 | HindIII restriction endonuclease |
| RE_HindVP | PF09519.5 | HindVP restriction endonuclease |
| RE_HpaII | PF09561.5 | HpaII restriction endonuclease |
| RE_LlaJI | PF09563.5 | LlaJI restriction endonuclease |
| RE_LlaMI | PF09562.5 | LlaMI restriction endonuclease |
| RE_MamI | PF09567.5 | MamI restriction endonuclease |
| RE_MjaI | PF09568.5 | MjaI restriction endonuclease |
| RE_NgoBV | PF09564.5 | NgoBV restriction endonuclease |
| RE_NgoFVII | PF09565.5 | NgoFVII restriction endonuclease |
| RE_NgoPII | PF09521.5 | NgoPII restriction endonuclease |
| RE_R_Pab1 | PF09522.5 | R.Pab1 restriction endonuclease |
| RE_SacI | PF09566.5 | SacI restriction endonuclease |
| RE_ScaI | PF09569.5 | ScaI restriction endonuclease |
| RE_SinI | PF09570.5 | SinI restriction endonuclease |
| RE_TaqI | PF09573.5 | TaqI restriction endonuclease |
| RE_TdeIII | PF09520.5 | Type II restriction endonuclease, TdeIII |
| RE_XamI | PF09572.5 | XamI restriction endonuclease |
| RE_XcyI | PF09571.5 | XcyI restriction endonuclease |
| RF-1 | PF00472.15 | RF-1 domain |
| RFamide_26RFa | PF11109.3 | Orexigenic neuropeptide Qrfp/P518 |
| RFC1 | PF08519.7 | Replication factor RFC1 C terminal domain |
| RFPL3_antisense | PF10489.4 | Ret finger protein-like 3 antisense |
| Rft-1 | PF04506.8 | Rft protein |
| RFX1_trans_act | PF04589.8 | RFX1 transcription activation region |
| RFX5_DNA_bdg | PF14621.1 | RFX5 DNA-binding domain |
| RFXA_RFXANK_bdg | PF15289.1 | Regulatory factor X-associated C-terminal binding domain |
| RFX_DNA_binding | PF02257.10 | RFX DNA-binding domain |
| RGCC | PF15151.1 | Response gene to complement 32 protein family |
| RGM_C | PF06534.8 | Repulsive guidance molecule (RGM) C-terminus |
| RGM_N | PF06535.7 | Repulsive guidance molecule (RGM) N-terminus |
| RGP | PF03214.8 | Reversibly glycosylated polypeptide |
| Rgp1 | PF08737.5 | Rgp1 |
| RgpF | PF05045.7 | Rhamnan synthesis protein F |
| RGS | PF00615.14 | Regulator of G protein signaling domain |
| RGS-like | PF09128.6 | Regulator of G protein signalling-like domain |
| RhaA | PF06134.6 | L-rhamnose isomerase (RhaA) |
| Rhabdo_glycop | PF00974.13 | Rhabdovirus spike glycoprotein |
| Rhabdo_M1 | PF03342.8 | Rhabdovirus M1 matrix protein (M1 polymerase-associated protein) |
| Rhabdo_M2 | PF04785.7 | Rhabdovirus matrix protein M2 |
| Rhabdo_matrix | PF03397.9 | Rhabdovirus matrix protein |
| Rhabdo_ncap | PF00945.13 | Rhabdovirus nucleocapsid protein |
| Rhabdo_ncap_2 | PF03216.8 | Rhabdovirus nucleoprotein |
| Rhabdo_NV | PF02484.10 | Rhabdovirus Non-virion protein |
| Rhamnogal_lyase | PF06045.6 | Rhamnogalacturonate lyase family |
| Rhamno_transf | PF11316.3 | Putative rhamnosyl transferase |
| RhaT | PF06379.7 | L-rhamnose-proton symport protein (RhaT) |
| RHD | PF00554.17 | Rel homology domain (RHD) |
| RHD3 | PF05879.7 | Root hair defective 3 GTP-binding protein (RHD3) |
| RhgB_N | PF09284.5 | Rhamnogalacturonase B, N-terminal |
| RHH_1 | PF01402.16 | Ribbon-helix-helix protein, copG family |
| RHH_2 | PF03693.9 | Uncharacterised protein family (UPF0156) |
| RHH_3 | PF12651.2 | Ribbon-helix-helix domain |
| RHH_4 | PF13467.1 | Ribbon-helix-helix domain |
| RHIM | PF12721.2 | RIP homotypic interaction motif |
| RHINO | PF15319.1 | RAD9, RAD1, HUS1-interacting nuclear orphan protein |
| Rhodanese | PF00581.15 | Rhodanese-like domain |
| RhodobacterPufX | PF11511.3 | Intrinsic membrane protein PufX |
| Rhodopsin_N | PF10413.4 | Amino terminal of the G-protein receptor rhodopsin |
| RhoGAP | PF00620.22 | RhoGAP domain |
| RhoGEF | PF00621.15 | RhoGEF domain |
| Rhomboid | PF01694.17 | Rhomboid family |
| Rhomboid_SP | PF12595.3 | Rhomboid serine protease |
| Rho_Binding | PF08912.6 | Rho Binding |
| Rho_GDI | PF02115.12 | RHO protein GDP dissociation inhibitor |
| Rho_N | PF07498.7 | Rho termination factor, N-terminal domain |
| Rho_RNA_bind | PF07497.7 | Rho termination factor, RNA-binding domain |
| RHS | PF03527.9 | RHS protein |
| RHSP | PF07999.6 | Retrotransposon hot spot protein |
| RHS_repeat | PF05593.9 | RHS Repeat |
| Rhv | PF00073.15 | picornavirus capsid protein |
| Rib | PF08428.5 | Rib/alpha-like repeat |
| RIB43A | PF05914.7 | RIB43A |
| RibD_C | PF01872.12 | RibD C-terminal domain |
| Ribonuclease | PF00545.15 | ribonuclease |
| Ribonuclease_3 | PF00636.21 | Ribonuclease III domain |
| Ribonuclease_P | PF00825.13 | Ribonuclease P |
| Ribonuclease_T2 | PF00445.13 | Ribonuclease T2 family |
| Ribonucleas_3_2 | PF11469.3 | Ribonuclease III |
| Ribonucleas_3_3 | PF14622.1 | Ribonuclease-III-like |
| Ribonuc_2-5A | PF06479.7 | Ribonuclease 2-5A |
| Ribonuc_L-PSP | PF01042.16 | Endoribonuclease L-PSP |
| Ribonuc_P_40 | PF08584.6 | Ribonuclease P 40kDa (Rpp40) subunit |
| Ribonuc_red_2_N | PF08471.5 | Class II vitamin B12-dependent ribonucleotide reductase |
| Ribonuc_red_lgC | PF02867.10 | Ribonucleotide reductase, barrel domain |
| Ribonuc_red_lgN | PF00317.16 | Ribonucleotide reductase, all-alpha domain |
| Ribonuc_red_sm | PF00268.16 | Ribonucleotide reductase, small chain |
| Ribophorin_I | PF04597.9 | Ribophorin I |
| Ribophorin_II | PF05817.9 | Oligosaccharyltransferase subunit Ribophorin II |
| Ribosomal_60s | PF00428.14 | 60s Acidic ribosomal protein |
| Ribosomal_L1 | PF00687.16 | Ribosomal protein L1p/L10e family |
| Ribosomal_L10 | PF00466.15 | Ribosomal protein L10 |
| Ribosomal_L11 | PF00298.14 | Ribosomal protein L11, RNA binding domain |
| Ribosomal_L11_N | PF03946.9 | Ribosomal protein L11, N-terminal domain |
| Ribosomal_L12 | PF00542.14 | Ribosomal protein L7/L12 C-terminal domain |
| Ribosomal_L13 | PF00572.13 | Ribosomal protein L13 |
| Ribosomal_L13e | PF01294.13 | Ribosomal protein L13e |
| Ribosomal_L14 | PF00238.14 | Ribosomal protein L14p/L23e |
| Ribosomal_L14e | PF01929.12 | Ribosomal protein L14 |
| Ribosomal_L15e | PF00827.12 | Ribosomal L15 |
| Ribosomal_L16 | PF00252.13 | Ribosomal protein L16p/L10e |
| Ribosomal_L17 | PF01196.14 | Ribosomal protein L17 |
| Ribosomal_L18ae | PF01775.12 | Ribosomal L18ae/LX protein domain |
| Ribosomal_L18e | PF00828.14 | Ribosomal protein L18e/L15 |
| Ribosomal_L18p | PF00861.17 | Ribosomal L18p/L5e family |
| Ribosomal_L18_c | PF14204.1 | Ribosomal L18 C-terminal region |
| Ribosomal_L19 | PF01245.15 | Ribosomal protein L19 |
| Ribosomal_L19e | PF01280.15 | Ribosomal protein L19e |
| Ribosomal_L2 | PF00181.18 | Ribosomal Proteins L2, RNA binding domain |
| Ribosomal_L20 | PF00453.13 | Ribosomal protein L20 |
| Ribosomal_L21e | PF01157.13 | Ribosomal protein L21e |
| Ribosomal_L21p | PF00829.16 | Ribosomal prokaryotic L21 protein |
| Ribosomal_L22 | PF00237.14 | Ribosomal protein L22p/L17e |
| Ribosomal_L22e | PF01776.12 | Ribosomal L22e protein family |
| Ribosomal_L23 | PF00276.15 | Ribosomal protein L23 |
| Ribosomal_L23eN | PF03939.8 | Ribosomal protein L23, N-terminal domain |
| Ribosomal_L24e | PF01246.15 | Ribosomal protein L24e |
| Ribosomal_L25p | PF01386.14 | Ribosomal L25p family |
| Ribosomal_L27 | PF01016.14 | Ribosomal L27 protein |
| Ribosomal_L27e | PF01777.13 | Ribosomal L27e protein family |
| Ribosomal_L28 | PF00830.14 | Ribosomal L28 family |
| Ribosomal_L28e | PF01778.12 | Ribosomal L28e protein family |
| Ribosomal_L29 | PF00831.18 | Ribosomal L29 protein |
| Ribosomal_L29e | PF01779.12 | Ribosomal L29e protein family |
| Ribosomal_L2_C | PF03947.13 | Ribosomal Proteins L2, C-terminal domain |
| Ribosomal_L3 | PF00297.17 | Ribosomal protein L3 |
| Ribosomal_L30 | PF00327.15 | Ribosomal protein L30p/L7e |
| Ribosomal_L30_N | PF08079.7 | Ribosomal L30 N-terminal domain |
| Ribosomal_L31 | PF01197.13 | Ribosomal protein L31 |
| Ribosomal_L31e | PF01198.14 | Ribosomal protein L31e |
| Ribosomal_L32e | PF01655.13 | Ribosomal protein L32 |
| Ribosomal_L32p | PF01783.18 | Ribosomal L32p protein family |
| Ribosomal_L33 | PF00471.15 | Ribosomal protein L33 |
| Ribosomal_L34 | PF00468.12 | Ribosomal protein L34 |
| Ribosomal_L34e | PF01199.13 | Ribosomal protein L34e |
| Ribosomal_L35Ae | PF01247.13 | Ribosomal protein L35Ae |
| Ribosomal_L35p | PF01632.14 | Ribosomal protein L35 |
| Ribosomal_L36 | PF00444.13 | Ribosomal protein L36 |
| Ribosomal_L36e | PF01158.13 | Ribosomal protein L36e |
| Ribosomal_L37 | PF08561.5 | Mitochondrial ribosomal protein L37 |
| Ribosomal_L37ae | PF01780.14 | Ribosomal L37ae protein family |
| Ribosomal_L37e | PF01907.14 | Ribosomal protein L37e |
| Ribosomal_L38e | PF01781.13 | Ribosomal L38e protein family |
| Ribosomal_L39 | PF00832.15 | Ribosomal L39 protein |
| Ribosomal_L4 | PF00573.17 | Ribosomal protein L4/L1 family |
| Ribosomal_L40e | PF01020.12 | Ribosomal L40e family |
| Ribosomal_L41 | PF05162.8 | Ribosomal protein L41 |
| Ribosomal_L44 | PF00935.14 | Ribosomal protein L44 |
| Ribosomal_L5 | PF00281.14 | Ribosomal protein L5 |
| Ribosomal_L50 | PF10501.4 | Ribosomal subunit 39S |
| Ribosomal_L5_C | PF00673.16 | ribosomal L5P family C-terminus |
| Ribosomal_L6 | PF00347.18 | Ribosomal protein L6 |
| Ribosomal_L6e | PF01159.14 | Ribosomal protein L6e |
| Ribosomal_L6e_N | PF03868.10 | Ribosomal protein L6, N-terminal domain |
| Ribosomal_L7Ae | PF01248.21 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family |
| Ribosomal_L9_C | PF03948.9 | Ribosomal protein L9, C-terminal domain |
| Ribosomal_L9_N | PF01281.14 | Ribosomal protein L9, N-terminal domain |
| Ribosomal_S10 | PF00338.17 | Ribosomal protein S10p/S20e |
| Ribosomal_S11 | PF00411.14 | Ribosomal protein S11 |
| Ribosomal_S13 | PF00416.17 | Ribosomal protein S13/S18 |
| Ribosomal_S13_N | PF08069.7 | Ribosomal S13/S15 N-terminal domain |
| Ribosomal_S14 | PF00253.16 | Ribosomal protein S14p/S29e |
| Ribosomal_S15 | PF00312.17 | Ribosomal protein S15 |
| Ribosomal_S16 | PF00886.14 | Ribosomal protein S16 |
| Ribosomal_S17 | PF00366.15 | Ribosomal protein S17 |
| Ribosomal_S17e | PF00833.13 | Ribosomal S17 |
| Ribosomal_S18 | PF01084.15 | Ribosomal protein S18 |
| Ribosomal_S19 | PF00203.16 | Ribosomal protein S19 |
| Ribosomal_S19e | PF01090.14 | Ribosomal protein S19e |
| Ribosomal_S2 | PF00318.15 | Ribosomal protein S2 |
| Ribosomal_S20p | PF01649.13 | Ribosomal protein S20 |
| Ribosomal_S21 | PF01165.15 | Ribosomal protein S21 |
| Ribosomal_S21e | PF01249.13 | Ribosomal protein S21e |
| Ribosomal_S22 | PF08136.6 | 30S ribosomal protein subunit S22 family |
| Ribosomal_S24e | PF01282.14 | Ribosomal protein S24e |
| Ribosomal_S25 | PF03297.10 | S25 ribosomal protein |
| Ribosomal_S26e | PF01283.14 | Ribosomal protein S26e |
| Ribosomal_S27 | PF01599.14 | Ribosomal protein S27a |
| Ribosomal_S27e | PF01667.12 | Ribosomal protein S27 |
| Ribosomal_S28e | PF01200.13 | Ribosomal protein S28e |
| Ribosomal_S30 | PF04758.9 | Ribosomal protein S30 |
| Ribosomal_S30AE | PF02482.14 | Sigma 54 modulation protein / S30EA ribosomal protein |
| Ribosomal_S3Ae | PF01015.13 | Ribosomal S3Ae family |
| Ribosomal_S3_C | PF00189.15 | Ribosomal protein S3, C-terminal domain |
| Ribosomal_S4 | PF00163.14 | Ribosomal protein S4/S9 N-terminal domain |
| Ribosomal_S4e | PF00900.15 | Ribosomal family S4e |
| Ribosomal_S4Pg | PF11993.3 | Ribosomal S4P (gammaproteobacterial) |
| Ribosomal_S5 | PF00333.15 | Ribosomal protein S5, N-terminal domain |
| Ribosomal_S5_C | PF03719.10 | Ribosomal protein S5, C-terminal domain |
| Ribosomal_S6 | PF01250.12 | Ribosomal protein S6 |
| Ribosomal_S6e | PF01092.14 | Ribosomal protein S6e |
| Ribosomal_S7 | PF00177.16 | Ribosomal protein S7p/S5e |
| Ribosomal_S7e | PF01251.13 | Ribosomal protein S7e |
| Ribosomal_S8 | PF00410.14 | Ribosomal protein S8 |
| Ribosomal_S8e | PF01201.17 | Ribosomal protein S8e |
| Ribosomal_S9 | PF00380.14 | Ribosomal protein S9/S16 |
| Ribosomal_TL5_C | PF14693.1 | Ribosomal protein TL5, C-terminal domain |
| Ribosom_S12_S23 | PF00164.20 | Ribosomal protein S12/S23 |
| Ribos_L4_asso_C | PF14374.1 | 60S ribosomal protein L4 C-terminal domain |
| Ribul_P_3_epim | PF00834.14 | Ribulose-phosphate 3 epimerase family |
| Rib_5-P_isom_A | PF06026.9 | Ribose 5-phosphate isomerase A (phosphoriboisomerase A) |
| Rib_hydrolayse | PF02267.12 | ADP-ribosyl cyclase |
| Rib_recp_KP_reg | PF05104.7 | Ribosome receptor lysine/proline rich region |
| RIC1 | PF07064.8 | RIC1 |
| RIC3 | PF15361.1 | Resistance to inhibitors of cholinesterase homologue 3 |
| Ric8 | PF10165.4 | Guanine nucleotide exchange factor synembryn |
| RICH | PF05062.7 | RICH domain |
| RicinB_lectin_2 | PF14200.1 | Ricin-type beta-trefoil lectin domain-like |
| Ricin_B_lectin | PF00652.17 | Ricin-type beta-trefoil lectin domain |
| Rick_17kDa_Anti | PF05433.10 | Glycine zipper 2TM domain |
| RICTOR_M | PF14666.1 | Rapamycin-insensitive companion of mTOR, middle domain |
| RICTOR_N | PF14664.1 | Rapamycin-insensitive companion of mTOR, N-term |
| RICTOR_phospho | PF14665.1 | Rapamycin-insensitive companion of mTOR, phosphorylation-site |
| RICTOR_V | PF14668.1 | Rapamycin-insensitive companion of mTOR, domain 5 |
| Rieske | PF00355.21 | Rieske [2Fe-2S] domain |
| Rieske_2 | PF13806.1 | Rieske-like [2Fe-2S] domain |
| Rif1_N | PF12231.3 | Rap1-interacting factor 1 N terminal |
| Rifin_STEVOR | PF02009.11 | Rifin/stevor family |
| RIG-I_C-RD | PF11648.3 | C-terminal domain of RIG-I |
| RIH_assoc | PF08454.6 | RyR and IP3R Homology associated |
| RIIa | PF02197.12 | Regulatory subunit of type II PKA R-subunit |
| RII_binding_1 | PF10522.4 | RII binding domain |
| RILP | PF11461.3 | Rab interacting lysosomal protein |
| RimK | PF08443.6 | RimK-like ATP-grasp domain |
| RimM | PF01782.13 | RimM N-terminal domain |
| RinB | PF06116.7 | Transcriptional activator RinB |
| RINGv | PF12906.2 | RING-variant domain |
| Ring_hydroxyl_A | PF00848.14 | Ring hydroxylating alpha subunit (catalytic domain) |
| Ring_hydroxyl_B | PF00866.13 | Ring hydroxylating beta subunit |
| RINT1_TIP1 | PF04437.8 | RINT-1 / TIP-1 family |
| RIO1 | PF01163.17 | RIO1 family |
| Rio2_N | PF09202.6 | Rio2, N-terminal |
| RIP | PF00161.14 | Ribosome inactivating protein |
| Ripply | PF14998.1 | Transcription Regulator |
| RIX1 | PF08167.7 | rRNA processing/ribosome biogenesis |
| RL11D | PF11088.3 | Glycoprotein encoding membrane proteins RL5A and RL6 |
| RLAN | PF14401.1 | RimK-like ATPgrasp N-terminal domain |
| RLI | PF04068.10 | Possible Fer4-like domain in RNase L inhibitor, RLI |
| RLL | PF10036.4 | Putative carnitine deficiency-associated protein |
| RloB | PF13707.1 | RloB-like protein |
| RMF | PF04957.7 | Ribosome modulation factor |
| RmlD_sub_bind | PF04321.12 | RmlD substrate binding domain |
| RMMBL | PF07521.7 | RNA-metabolising metallo-beta-lactamase |
| RMP | PF14996.1 | Retinal Maintenance |
| RmuC | PF02646.11 | RmuC family |
| RNA12 | PF10443.4 | RNA12 protein |
| RnaseA | PF00074.15 | Pancreatic ribonuclease |
| RNaseH_C | PF09293.5 | T4 RNase H, C terminal |
| RNase_E_G | PF10150.4 | Ribonuclease E/G family |
| RNase_H | PF00075.19 | RNase H |
| RNase_H2-Ydr279 | PF09468.5 | Ydr279p protein family (RNase H2 complex component) |
| RNase_H2_suC | PF08615.6 | Ribonuclease H2 non-catalytic subunit (Ylr154p-like) |
| RNase_HII | PF01351.13 | Ribonuclease HII |
| RNase_H_2 | PF13482.1 | RNase_H superfamily |
| RNase_PH | PF01138.16 | 3' exoribonuclease family, domain 1 |
| RNase_PH_C | PF03725.10 | 3' exoribonuclease family, domain 2 |
| RNase_P_p30 | PF01876.11 | RNase P subunit p30 |
| RNase_P_pop3 | PF08228.6 | RNase P subunit Pop3 |
| RNase_P_Rpp14 | PF01900.14 | Rpp14/Pop5 family |
| RNase_T | PF00929.19 | Exonuclease |
| RNase_Zc3h12a | PF11977.3 | Zc3h12a-like Ribonuclease NYN domain |
| RNase_Zc3h12a_2 | PF14626.1 | Zc3h12a-like Ribonuclease NYN domain |
| RNA_bind | PF08675.6 | RNA binding domain |
| RNA_binding | PF01877.12 | RNA binding |
| RNA_bind_2 | PF10133.4 | Predicted RNA-binding protein |
| RNA_capsid | PF03035.9 | Calicivirus putative RNA polymerase/capsid protein |
| RNA_GG_bind | PF10258.4 | PHAX RNA-binding domain |
| RNA_helicase | PF00910.17 | RNA helicase |
| RNA_ligase | PF09414.5 | RNA ligase |
| RNA_lig_T4_1 | PF09511.5 | RNA ligase |
| RNA_Me_trans | PF04252.8 | Predicted SAM-dependent RNA methyltransferase |
| RNA_pol | PF00940.14 | DNA-dependent RNA polymerase |
| RNA_polI_A14 | PF08203.6 | Yeast RNA polymerase I subunit RPA14 |
| RNA_polI_A34 | PF08208.6 | DNA-directed RNA polymerase I subunit RPA34.5 |
| RNA_pol_3_Rpc31 | PF11705.3 | DNA-directed RNA polymerase III subunit Rpc31 |
| RNA_pol_A_bac | PF01000.21 | RNA polymerase Rpb3/RpoA insert domain |
| RNA_pol_A_CTD | PF03118.10 | Bacterial RNA polymerase, alpha chain C terminal domain |
| RNA_pol_I_A49 | PF06870.7 | A49-like RNA polymerase I associated factor |
| RNA_pol_I_TF | PF04090.7 | RNA polymerase I specific initiation factor |
| RNA_pol_L | PF01193.19 | RNA polymerase Rpb3/Rpb11 dimerisation domain |
| RNA_pol_L_2 | PF13656.1 | RNA polymerase Rpb3/Rpb11 dimerisation domain |
| RNA_POL_M_15KD | PF02150.11 | RNA polymerases M/15 Kd subunit |
| RNA_pol_N | PF01194.12 | RNA polymerases N / 8 kDa subunit |
| RNA_pol_Rbc25 | PF08292.7 | RNA polymerase III subunit Rpc25 |
| RNA_pol_Rpa2_4 | PF06883.7 | RNA polymerase I, Rpa2 specific domain |
| RNA_pol_Rpb1_1 | PF04997.7 | RNA polymerase Rpb1, domain 1 |
| RNA_pol_Rpb1_2 | PF00623.15 | RNA polymerase Rpb1, domain 2 |
| RNA_pol_Rpb1_3 | PF04983.13 | RNA polymerase Rpb1, domain 3 |
| RNA_pol_Rpb1_4 | PF05000.12 | RNA polymerase Rpb1, domain 4 |
| RNA_pol_Rpb1_5 | PF04998.12 | RNA polymerase Rpb1, domain 5 |
| RNA_pol_Rpb1_6 | PF04992.9 | RNA polymerase Rpb1, domain 6 |
| RNA_pol_Rpb1_7 | PF04990.7 | RNA polymerase Rpb1, domain 7 |
| RNA_pol_Rpb1_R | PF05001.8 | RNA polymerase Rpb1 C-terminal repeat |
| RNA_pol_Rpb2_1 | PF04563.10 | RNA polymerase beta subunit |
| RNA_pol_Rpb2_2 | PF04561.9 | RNA polymerase Rpb2, domain 2 |
| RNA_pol_Rpb2_3 | PF04565.11 | RNA polymerase Rpb2, domain 3 |
| RNA_pol_Rpb2_4 | PF04566.8 | RNA polymerase Rpb2, domain 4 |
| RNA_pol_Rpb2_45 | PF10385.4 | RNA polymerase beta subunit external 1 domain |
| RNA_pol_Rpb2_5 | PF04567.12 | RNA polymerase Rpb2, domain 5 |
| RNA_pol_Rpb2_6 | PF00562.23 | RNA polymerase Rpb2, domain 6 |
| RNA_pol_Rpb2_7 | PF04560.15 | RNA polymerase Rpb2, domain 7 |
| RNA_pol_Rpb4 | PF03874.11 | RNA polymerase Rpb4 |
| RNA_pol_Rpb5_C | PF01191.14 | RNA polymerase Rpb5, C-terminal domain |
| RNA_pol_Rpb5_N | PF03871.9 | RNA polymerase Rpb5, N-terminal domain |
| RNA_pol_Rpb6 | PF01192.17 | RNA polymerase Rpb6 |
| RNA_pol_Rpb8 | PF03870.10 | RNA polymerase Rpb8 |
| RNA_pol_Rpc34 | PF05158.7 | RNA polymerase Rpc34 subunit |
| RNA_pol_Rpc4 | PF05132.9 | RNA polymerase III RPC4 |
| RNA_pol_Rpc82 | PF05645.8 | RNA polymerase III subunit RPC82 |
| RNA_pol_Rpo13 | PF12136.3 | RNA polymerase Rpo13 subunit HTH domain |
| RNA_replicase_B | PF03431.8 | RNA replicase, beta-chain |
| RNB | PF00773.14 | RNB domain |
| Rnf-Nqr | PF02508.9 | Rnf-Nqr subunit, membrane protein |
| RNF111_N | PF15303.1 | E3 ubiquitin-protein ligase Arkadia N-terminus |
| RnfC_N | PF13375.1 | RnfC Barrel sandwich hybrid domain |
| RNHCP | PF12647.2 | RNHCP domain |
| Rnk_N | PF14760.1 | Rnk N-terminus |
| RNR_inhib | PF08591.5 | Ribonucleotide reductase inhibitor |
| RNR_N | PF08343.5 | Ribonucleotide reductase N-terminal |
| Robl_LC7 | PF03259.12 | Roadblock/LC7 domain |
| Rod-binding | PF10135.4 | Rod binding protein |
| Rod_C | PF10493.4 | Rough deal protein C-terminal region |
| Rod_cone_degen | PF15201.1 | Progressive rod-cone degeneration |
| ROF | PF07073.7 | Modulator of Rho-dependent transcription termination (ROF) |
| Rogdi_lz | PF10259.4 | Rogdi leucine zipper containing protein |
| ROK | PF00480.15 | ROK family |
| ROKNT | PF08067.6 | ROKNT (NUC014) domain |
| RolB_RolC | PF02027.12 | RolB/RolC glucosidase family |
| Romo1 | PF10247.4 | Reactive mitochondrial oxygen species modulator 1 |
| Rootletin | PF15035.1 | Ciliary rootlet component, centrosome cohesion |
| Root_cap | PF06830.6 | Root cap |
| Rop | PF01815.11 | Rop protein |
| Rop-like | PF05082.8 | Rop-like |
| Rossmann-like | PF10727.4 | Rossmann-like domain |
| ROS_MUCR | PF05443.6 | ROS/MUCR transcriptional regulator protein |
| Rot1 | PF10681.4 | Chaperone for protein-folding within the ER, fungal |
| Rotamase | PF00639.16 | PPIC-type PPIASE domain |
| Rotamase_2 | PF13145.1 | PPIC-type PPIASE domain |
| Rotamase_3 | PF13616.1 | PPIC-type PPIASE domain |
| Rotavirus_VP1 | PF12289.3 | Rotavirus VP1 structural protein |
| Rotavirus_VP3 | PF06929.6 | Rotavirus VP3 protein |
| Rotavirus_VP7 | PF05868.6 | Rotavirus major outer capsid protein VP7 |
| Rota_Capsid_VP6 | PF00980.12 | Rotavirus major capsid protein VP6 |
| Rota_NS26 | PF01525.11 | Rotavirus NS26 |
| Rota_NS35 | PF02509.9 | Rotavirus non-structural protein 35 |
| Rota_NS53 | PF00981.12 | Rotavirus RNA-binding Protein 53 (NS53) |
| Rota_NS6 | PF04866.7 | Rotavirus non-structural protein 6 |
| Rota_NSP3 | PF01665.11 | Rotavirus non-structural protein NSP3 |
| Rota_NSP4 | PF01452.11 | Rotavirus non structural protein |
| Rota_VP2 | PF05087.7 | Rotavirus VP2 protein |
| Roughex | PF06020.6 | Drosophila roughex protein |
| Rox3 | PF08633.5 | Rox3 mediator complex subunit |
| RP-C | PF03428.8 | Replication protein C N-terminal domain |
| RP-C_C | PF11800.3 | Replication protein C C-terminal region |
| RP1-2 | PF12042.3 | Tubuliform egg casing silk strands structural domain |
| RPA | PF10134.4 | Replication initiator protein A |
| RPAP1_C | PF08620.5 | RPAP1-like, C-terminal |
| RPAP1_N | PF08621.5 | RPAP1-like, N-terminal |
| RPAP2_Rtr1 | PF04181.8 | Rtr1/RPAP2 family |
| RPAP3_C | PF13877.1 | Potential Monad-binding region of RPAP3 |
| RPA_C | PF08784.6 | Replication protein A C terminal |
| RPA_interact_C | PF14768.1 | Replication protein A interacting C-terminal |
| RPA_interact_M | PF14767.1 | Replication protein A interacting middle |
| RPA_interact_N | PF14766.1 | Replication protein A interacting N-terminal |
| RPE65 | PF03055.10 | Retinal pigment epithelial membrane protein |
| RPEL | PF02755.10 | RPEL repeat |
| RPM2 | PF08579.6 | Mitochondrial ribonuclease P subunit (RPM2) |
| Rpn3_C | PF08375.6 | Proteasome regulatory subunit C-terminal |
| RPN7 | PF10602.4 | 26S proteasome subunit RPN7 |
| RPOL_N | PF14700.1 | DNA-directed RNA polymerase N-terminal |
| Rpp20 | PF12328.3 | Rpp20 subunit of nuclear RNase MRP and P |
| Rpr2 | PF04032.11 | RNAse P Rpr2/Rpp21/SNM1 subunit domain |
| RPT | PF13446.1 | A repeated domain in UCH-protein |
| RPW8 | PF05659.6 | Arabidopsis broad-spectrum mildew resistance protein RPW8 |
| RQC | PF09382.5 | RQC domain |
| RraB | PF06877.6 | Regulator of ribonuclease activity B |
| RRF | PF01765.14 | Ribosome recycling factor |
| Rrf2 | PF02082.15 | Transcriptional regulator |
| RRF_GI | PF12614.3 | Ribosome recycling factor |
| RRM | PF10378.4 | Putative RRM domain |
| RRM_1 | PF00076.17 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
| RRM_2 | PF04059.7 | RNA recognition motif 2 |
| RRM_3 | PF08777.6 | RNA binding motif |
| RRM_4 | PF10598.4 | RNA recognition motif of the spliceosomal PrP8 |
| RRM_5 | PF13893.1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
| RRM_6 | PF14259.1 | RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) |
| RRM_DME | PF15628.1 | RRM in Demeter |
| RRN3 | PF05327.6 | RNA polymerase I specific transcription initiation factor RRN3 |
| Rrn6 | PF10214.4 | RNA polymerase I-specific transcription-initiation factor |
| RRN7 | PF11781.3 | RNA polymerase I-specific transcription initiation factor Rrn7 |
| RRN9 | PF10680.4 | RNA polymerase I specific transcription initiation factor |
| RrnaAD | PF00398.15 | Ribosomal RNA adenine dimethylase |
| RRP14 | PF15459.1 | 60S ribosome biogenesis protein Rrp14 |
| Rrp15p | PF07890.7 | Rrp15p |
| RRP7 | PF12923.2 | Ribosomal RNA-processing protein 7 (RRP7) |
| RRS1 | PF04939.7 | Ribosome biogenesis regulatory protein (RRS1) |
| RRXRR | PF14239.1 | RRXRR protein |
| RR_TM4-6 | PF06459.7 | Ryanodine Receptor TM 4-6 |
| RS4NT | PF08071.7 | RS4NT (NUC023) domain |
| Rsa3 | PF14615.1 | Ribosome-assembly protein 3 |
| RsbRD_N | PF14361.1 | RsbT co-antagonist protein rsbRD N-terminal domain |
| Rsbr_N | PF08678.5 | Rsbr N terminal |
| RsbU_N | PF08673.5 | Phosphoserine phosphatase RsbU, N-terminal domain |
| Rsc14 | PF08586.5 | RSC complex, Rsc14/Ldb7 subunit |
| RSD-2 | PF07547.8 | RSD-2 N-terminal domain |
| Rsd_AlgQ | PF04353.8 | Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ |
| RseA_C | PF03873.8 | Anti sigma-E protein RseA, C-terminal domain |
| RseA_N | PF03872.8 | Anti sigma-E protein RseA, N-terminal domain |
| RseC_MucC | PF04246.7 | Positive regulator of sigma(E), RseC/MucC |
| RSF | PF14876.1 | Respiratory growth transcriptional regulator |
| RsgI_N | PF12791.2 | Anti-sigma factor N-terminus |
| RskA | PF10099.4 | Anti-sigma-K factor rskA |
| Rsm1 | PF08600.5 | Rsm1-like |
| Rsm22 | PF09243.5 | Mitochondrial small ribosomal subunit Rsm22 |
| RsmJ | PF04378.8 | Ribosomal RNA small subunit methyltransferase D, RsmJ |
| RSN1_TM | PF13967.1 | Late exocytosis, associated with Golgi transport |
| RSS_P20 | PF11757.3 | Suppressor of RNA silencing P21-like |
| RST | PF12174.3 | RCD1-SRO-TAF4 (RST) plant domain |
| RSV_NS2 | PF03113.9 | Respiratory synctial virus non-structural protein NS2 |
| RTA1 | PF04479.8 | RTA1 like protein |
| RTBV_P12 | PF06361.6 | Rice tungro bacilliform virus P12 protein |
| RTBV_P46 | PF06216.6 | Rice tungro bacilliform virus P46 protein |
| RTC | PF01137.16 | RNA 3'-terminal phosphate cyclase |
| RTC4 | PF14474.1 | RTC4-like domain |
| RtcB | PF01139.12 | tRNA-splicing ligase RtcB |
| RtcR | PF06956.6 | Regulator of RNA terminal phosphate cyclase |
| RTC_insert | PF05189.8 | RNA 3'-terminal phosphate cyclase (RTC), insert domain |
| RteC | PF09357.5 | RteC protein |
| Rtf2 | PF04641.7 | Rtf2 RING-finger |
| RTP | PF02334.11 | Replication terminator protein |
| RTP801_C | PF07809.6 | RTP801 C-terminal region |
| Rtt102p | PF09510.5 | Rtt102p-like transcription regulator protein |
| Rtt106 | PF08512.7 | Histone chaperone Rttp106-like |
| RTTN_N | PF14726.1 | Rotatin, an armadillo repeat protein, centriole functioning |
| RTX | PF02382.10 | RTX N-terminal domain |
| RtxA | PF07634.6 | RtxA repeat |
| RTX_C | PF08339.5 | RTX C-terminal domain |
| Rubella_Capsid | PF05750.6 | Rubella capsid protein |
| Rubella_E1 | PF05748.6 | Rubella membrane glycoprotein E1 |
| Rubella_E2 | PF05749.6 | Rubella membrane glycoprotein E2 |
| Rubis-subs-bind | PF09273.6 | Rubisco LSMT substrate-binding |
| RuBisCO_large | PF00016.15 | Ribulose bisphosphate carboxylase large chain, catalytic domain |
| RuBisCO_large_N | PF02788.11 | Ribulose bisphosphate carboxylase large chain, N-terminal domain |
| RuBisCO_small | PF00101.15 | Ribulose bisphosphate carboxylase, small chain |
| Rubi_NSP_C | PF12601.3 | Rubivirus non-structural protein |
| Rubredoxin | PF00301.15 | Rubredoxin |
| Rubrerythrin | PF02915.12 | Rubrerythrin |
| RUN | PF02759.14 | RUN domain |
| Runt | PF00853.14 | Runt domain |
| RunxI | PF08504.6 | Runx inhibition domain |
| RusA | PF05866.6 | Endodeoxyribonuclease RusA |
| RuvA_C | PF07499.8 | RuvA, C-terminal domain |
| RuvA_N | PF01330.16 | RuvA N terminal domain |
| RuvB_C | PF05491.8 | Holliday junction DNA helicase ruvB C-terminus |
| RuvB_N | PF05496.7 | Holliday junction DNA helicase ruvB N-terminus |
| RuvC | PF02075.12 | Crossover junction endodeoxyribonuclease RuvC |
| RVP | PF00077.15 | Retroviral aspartyl protease |
| RVP_2 | PF08284.6 | Retroviral aspartyl protease |
| RVT_1 | PF00078.22 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RVT_2 | PF07727.9 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RVT_3 | PF13456.1 | Reverse transcriptase-like |
| RVT_connect | PF06815.8 | Reverse transcriptase connection domain |
| RVT_N | PF13655.1 | N-terminal domain of reverse transcriptase |
| RVT_thumb | PF06817.9 | Reverse transcriptase thumb domain |
| RWD | PF05773.17 | RWD domain |
| RWP-RK | PF02042.10 | RWP-RK domain |
| RXT2_N | PF08595.6 | RXT2-like, N-terminal |
| Rxt3 | PF08642.5 | Histone deacetylation protein Rxt3 |
| RYDR_ITPR | PF01365.16 | RIH domain |
| RyR | PF02026.11 | RyR domain |
| Rz1 | PF06085.6 | Lipoprotein Rz1 precursor |
| R_equi_Vir | PF05526.6 | Rhodococcus equi virulence-associated protein |
| rOmpB | PF12334.3 | Rickettsia outer membrane protein B |
| rpo132 | PF12415.3 | Poxvirus DNA dependent RNA polymerase |
| rpo30_N | PF12410.3 | Poxvirus DNA dependent RNA polymerase 30kDa subunit |
| rRNA_methylase | PF06962.7 | Putative rRNA methylase |
| rRNA_proc-arch | PF13234.1 | rRNA-processing arch domain |
| rRNA_processing | PF08524.6 | rRNA processing |
| rve | PF00665.21 | Integrase core domain |
| rve_2 | PF13333.1 | Integrase core domain |
| rve_3 | PF13683.1 | Integrase core domain |