MulPSSM database

Browse through the Pali families on this page.

All alpha class All beta class Alpha/Beta class Alpha+Beta class Multidomain class Membrane proteins class Small proteins class

All alpha class

a.1.1.1 - Truncated hemoglobin
a.1.1.4 - Nerve tissue mini-hemoglobin (neural globin)
a.1.1.2 - Globins
a.1.1.3 - Phycocyanin-like phycobilisome proteins
a.1.2.1 - Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
a.1.2.2 - Dihydropyrimidine dehydrogenase, N-terminal domain
a.2.1.1 - GreA transcript cleavage protein, N-terminal domain
a.2.2.1 - Ribosomal protein L29 (L29p)
a.2.3.1 - Chaperone J-domain
a.2.5.1 - Prefoldin
a.2.6.1 - HR1 repeat
a.2.7.1 - Seryl-tRNA synthetase (SerRS)
a.2.7.2 - Phenylalanyl-tRNA synthetase (PheRS)
a.2.7.3 - Valyl-tRNA synthetase (ValRS) C-terminal domain
a.2.7.4 - Methicillin resistance protein FemA probable tRNA-binding arm
a.2.8.1 - Eukaryotic DNA topoisomerase I, dispensable insert domain
a.2.9.1 - C-terminal UvrC-binding domain of UvrB
a.2.10.1 - Epsilon subunit of F1F0-ATP synthase C-terminal domain
a.2.11.1 - Fe,Mn superoxide dismutase (SOD), N-terminal domain
a.2.12.1 - Sporulation inhibitor Sda
a.2.13.1 - Transcriptional repressor TraM
a.2.14.1 - DnaK suppressor protein DksA, alpha-hairpin domain
a.2.15.1 - ISY1 N-terminal domain-like
a.2.16.1 - Siah interacting protein N terminal domain-like
a.2.17.1 - VPS23 C-terminal domain
a.2.17.2 - VPS28 N-terminal domain
a.2.17.3 - VPS37 C-terminal domain-like
a.2.18.1 - SPy1572-like
a.2.19.1 - Rabenosyn-5 Rab-binding domain-like
a.2.20.1 - MxiH-like
a.2.21.1 - YznC-like
a.139.1.1 - Type I dockerin domain
a.140.1.1 - LEM domain
a.140.2.1 - SAP domain
a.140.3.1 - Rho termination factor, N-terminal domain
a.140.3.2 - YqbF C-terminal domain-like
a.140.4.1 - Recombination endonuclease VII, C-terminal and dimerization domains
a.140.5.1 - DNA-binding domain of EIN3-like
a.140.6.1 - PRP4-like
a.271.1.1 - SOCS box-like
a.143.1.1 - RNA polymerase omega subunit
a.143.1.2 - RPB6
a.212.1.1 - KRAB domain (Kruppel-associated box)
a.3.1.1 - monodomain cytochrome c
a.3.1.2 - N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
a.3.1.6 - Quinoprotein alcohol dehydrogenase, C-terminal domain
a.3.1.3 - Cytochrome bc1 domain
a.3.1.4 - Two-domain cytochrome c
a.3.1.8 - Di-heme cytochrome c SoxA
a.3.1.5 - Di-heme cytochrome c peroxidase
a.3.1.7 - Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
a.4.1.1 - Homeodomain
a.4.1.2 - Recombinase DNA-binding domain
a.4.1.3 - Myb/SANT domain
a.4.1.13 - SLIDE domain
a.4.1.11 - GARP response regulators
a.4.1.4 - DNA-binding domain of telomeric protein
a.4.1.5 - Paired domain
a.4.1.6 - DNA-binding domain of rap1
a.4.1.7 - Centromere-binding
a.4.1.12 - FIS-like
a.4.1.8 - AraC type transcriptional activator
a.4.1.9 - Tetracyclin repressor-like, N-terminal domain
a.4.1.14 - Middle operon regulator, Mor
a.4.1.15 - Psq domain
a.4.1.16 - Alr1493-like
a.4.1.17 - Nanomeric phage protein-like
a.4.1.18 - SWIRM domain
a.4.1.19 - Cgl2762-like
a.4.1.20 - RpiR-like
a.4.2.1 - Methylated DNA-protein cysteine methyltransferase, C-terminal domain
a.4.3.1 - ARID domain
a.4.5.1 - Biotin repressor-like
a.4.5.2 - LexA repressor, N-terminal DNA-binding domain
a.4.5.3 - Arginine repressor (ArgR), N-terminal DNA-binding domain
a.4.5.38 - Transcriptional repressor Rex, N-terminal domain
a.4.5.4 - CAP C-terminal domain-like
a.4.5.32 - Lrp/AsnC-like transcriptional regulator N-terminal domain
a.4.5.5 - ArsR-like transcriptional regulators
a.4.5.33 - Transcriptional regulator IclR, N-terminal domain
a.4.5.28 - MarR-like transcriptional regulators
a.4.5.36 - DNA-binding protein Mj223
a.4.5.39 - Penicillinase repressor
a.4.5.6 - GntR-like transcriptional regulators
a.4.5.40 - N-terminal domain of Bacillus PurR
a.4.5.7 - Replication terminator protein (RTP)
a.4.5.37 - LysR-like transcriptional regulators
a.4.5.8 - N-terminal domain of molybdate-dependent transcriptional regulator ModE
a.4.5.9 - Transcription factor MotA, activation domain
a.4.5.41 - Transcription factor E/IIe-alpha, N-terminal domain
a.4.5.42 - FUR-like
a.4.5.10 - Replication initiation protein
a.4.5.11 - Helicase DNA-binding domain
a.4.5.43 - RecQ helicase DNA-binding domain-like
a.4.5.34 - SCF ubiquitin ligase complex WHB domain
a.4.5.35 - C-terminal fragment of elongation factor SelB
a.4.5.12 - Restriction endonuclease FokI, N-terminal (recognition) domain
a.4.5.27 - TnsA endonuclease, C-terminal domain
a.4.5.29 - Plant O-methyltransferase, N-terminal domain
a.4.5.13 - Linker histone H1/H5
a.4.5.14 - Forkhead DNA-binding domain
a.4.5.15 - DNA-binding domain from rap30
a.4.5.30 - C-terminal domain of the rap74 subunit of TFIIF
a.4.5.16 - C-terminal domain of RPA32
a.4.5.31 - DEP domain
a.4.5.17 - Cell cycle transcription factor e2f-dp
a.4.5.18 - The central core domain of TFIIE beta
a.4.5.19 - Z-DNA binding domain
a.4.5.20 - P4 origin-binding domain-like
a.4.5.21 - ets domain
a.4.5.22 - Heat-shock transcription factor
a.4.5.23 - Interferon regulatory factor
a.4.5.44 - 39 kda initiator binding protein, IBP39, N-terminal domain
a.4.5.24 - Iron-dependent repressor protein
a.4.5.45 - Dissimilatory sulfite reductase DsvD
a.4.5.46 - La domain
a.4.5.25 - Methionine aminopeptidase, insert domain
a.4.5.47 - PCI domain (PINT motif)
a.4.5.48 - F93-like
a.4.5.49 - Archaeal DNA-binding protein
a.4.5.50 - TrmB-like
a.4.5.51 - Heat-inducible transcription repressor HrcA, N-terminal domain
a.4.5.52 - DNA replication factor Cdt1
a.4.5.53 - Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
a.4.5.54 - Vacuolar sorting protein domain
a.4.5.55 - Transcriptional regulator Rrf2
a.4.5.56 - Rio2 serine protein kinase N-terminal domain
a.4.5.57 - Rad21/Rec8-like
a.4.5.58 - Hypothetical protein PH1932
a.4.5.59 - An Obfc1 domain
a.4.5.60 - ScpB/YpuH-like
a.4.5.61 - PadR-like
a.4.5.62 - Hypothetical protein YhgG
a.4.5.63 - ROK associated domain
a.4.5.64 - PF1790-like
a.4.5.65 - MukF N-terminal domain-like
a.4.5.66 - CodY HTH domain
a.4.5.67 - FtsK C-terminal domain-like
a.4.5.68 - Nudix-associated domain
a.4.5.69 - HxlR-like
a.4.5.70 - Marine metagenome family WH1
a.4.5.71 - ReutB4095-like
a.4.5.72 - PH0730 N-terminal domain-like
a.4.5.73 - FaeA-like
a.4.5.74 - STY4665 C-terminal domain-like
a.4.5.75 - PSPTO2686-like
a.4.5.76 - RHA1 ro06458-like
a.4.5.77 - YjcQ-like
a.4.5.78 - F112-like
a.4.5.79 - MerB N-terminal domain-like
a.4.5.80 - CED-4 C-terminal domain-like
a.4.5.81 - ELL N2 domain-like
a.4.5.82 - PF0610-like
a.4.5.83 - Rv2827c N-terminal domain-like
a.4.5.84 - Rps19E-like
a.4.5.85 - RPO3F domain-like
a.4.6.1 - PhoB-like
a.4.6.2 - GerE-like (LuxR/UhpA family of transcriptional regulators)
a.4.6.3 - Spo0A
a.4.12.1 - Trp repressor, TrpR
a.4.12.2 - Chromosomal replication initiation factor DnaA C-terminal domain IV
a.4.12.3 - SPO1678-like
a.4.7.1 - Ribosomal protein L11, C-terminal domain
a.4.8.1 - Ribosomal protein S18
a.4.9.1 - Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
a.4.10.1 - N-terminal Zn binding domain of HIV integrase
a.4.11.1 - RNA polymerase subunit RPB10
a.4.13.1 - Sigma3 domain
a.4.13.2 - Sigma4 domain
a.4.13.3 - YlxM/p13-like
a.4.14.1 - KorB DNA-binding domain-like
a.4.15.1 - Rps17e-like
a.159.2.1 - FF domain
a.159.1.1 - Protein serine/threonine phosphatase 2C, C-terminal domain
a.159.3.1 - B-form DNA mimic Ocr
a.159.4.1 - DEK C-terminal domain
a.159.5.1 - IscX-like
a.5.1.1 - DNA helicase RuvA subunit, C-terminal domain
a.5.2.1 - UBA domain
a.5.2.2 - TS-N domain
a.5.2.3 - TAP-C domain-like
a.5.2.4 - CUE domain
a.5.7.1 - DmpG/LeuA communication domain-like
a.5.7.2 - Conserved carboxylase domain
a.5.3.1 - CRAL/TRIO N-terminal domain
a.5.4.1 - Elongation factor TFIIS domain 2
a.5.6.1 - Double-stranded DNA-binding domain
a.5.8.1 - Hypothetical protein AF0491, middle domain
a.5.9.1 - HBS1-like domain
a.5.10.1 - FGAM synthase PurL, linker domain
a.156.1.1 - Ribosomal protein S13
a.156.1.2 - Middle domain of MutM-like DNA repair proteins
a.156.1.3 - Topoisomerase VI-B subunit middle domain
a.6.1.1 - Domains B1 and B5 of PheRS-beta, PheT
a.6.1.2 - DNA repair factor XPA DNA- and RPA-binding domain, C-terminal subdomain
a.6.1.4 - Dachshund-homology domain
a.6.1.3 - DNA-binding N-terminal domain of transcription activators
a.6.1.5 - Terminase gpNU1 subunit domain
a.6.1.7 - Excisionase-like
a.6.1.6 - N-terminal subdomain of bacterial translation initiation factor IF2
a.7.1.1 - Spectrin repeat
a.7.2.1 - Enzyme IIa from lactose specific PTS, IIa-lac
a.7.3.1 - Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
a.7.4.1 - Smac/diablo
a.7.7.1 - BAG domain
a.7.8.1 - GAT domain
a.7.8.2 - Phosphoinositide-binding clathrin adaptor, domain 2
a.7.5.1 - Tubulin chaperone cofactor A
a.7.6.1 - Ribosomal protein S20
a.7.10.1 - Glycogen synthesis protein GlgS
a.7.11.1 - Alpha-hemoglobin stabilizing protein AHSP
a.7.12.1 - PhoU-like
a.7.13.1 - XseB-like
a.7.14.1 - MIT domain
a.7.15.1 - PPK N-terminal domain-like
a.7.16.1 - MIT domain
a.7.17.1 - Efb C-domain-like
a.8.1.1 - Immunoglobulin-binding protein A modules
a.8.1.2 - GA module, an albumin-binding domain
a.8.2.1 - Plasmid maintenance system epsilon/zeta, antidote epsilon subunit
a.8.3.2 - 4-alpha-glucanotransferase, domain 2
a.8.3.1 - alpha-mannosidase, domain 2
a.8.3.3 - AmyC C-terminal domain-like
a.8.5.1 - Phosphoprotein XD domain
a.8.6.1 - Staphylocoagulase
a.8.4.1 - Heat shock protein 70kD (HSP70), C-terminal subdomain
a.8.7.1 - Typo IV secretion system protein TraC
a.8.8.1 - Avirulence protein AvrPto
a.8.9.1 - Coronavirus NSP7-like
a.8.10.1 - Vng1086c-like
a.8.11.1 - AF1782-like
a.9.1.1 - Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
a.239.1.1 - ChaB-like
a.10.1.1 - Protozoan pheromone proteins
a.10.2.1 - Hypothetical membrane protein Ta0354, soluble domain
a.11.1.1 - Acyl-CoA binding protein
a.11.2.1 - Second domain of FERM
a.272.1.1 - YqgQ-like
a.12.1.1 - Kix domain of CBP (creb binding protein)
a.13.1.1 - RAP domain
a.14.1.1 - VHP, Villin headpiece domain
a.240.1.1 - BSD domain
a.15.1.1 - TAF(II)230 TBP-binding fragment
a.16.1.1 - N-terminal, RNA-binding domain of nonstructural protein NS1
a.16.1.2 - Ribosomal protein S15
a.16.1.3 - a tRNA synthase domain
a.141.1.1 - Frizzled cysteine-rich domain
a.18.1.1 - T4 endonuclease V
a.19.1.1 - Fertilization protein
a.20.1.1 - Peptidoglycan binding domain, PGBD
a.20.1.2 - MMP N-terminal domain
a.21.1.1 - HMG-box
a.22.1.1 - Nucleosome core histones
a.22.1.2 - Archaeal histone
a.22.1.3 - TBP-associated factors, TAFs
a.22.1.4 - Bacterial histone-fold protein
a.23.1.1 - HSC20 (HSCB), C-terminal oligomerisation domain
a.23.2.1 - Diol dehydratase, gamma subunit
a.23.3.1 - Methane monooxygenase hydrolase, gamma subunit
a.23.4.1 - Mitochondrial import receptor subunit Tom20
a.23.5.1 - Hemolysin expression modulating protein HHA
a.23.6.1 - EF2458-like
a.23.7.1 - YvfG-like
a.161.1.1 - beta-catenin-interacting protein ICAT
a.237.1.1 - DNA polymerase III theta subunit-like
a.24.1.1 - Apolipoprotein
a.24.2.1 - Aspartate receptor, ligand-binding domain
a.24.3.1 - Cytochrome b562
a.24.3.2 - Cytochrome c'-like
a.24.4.1 - Hemerythrin-like
a.24.5.1 - TMV-like viral coat proteins
a.24.7.1 - FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
a.24.8.1 - Proteasome activator
a.24.9.1 - alpha-catenin/vinculin
a.24.9.2 - VBS domain
a.24.14.1 - FAT domain of focal adhesion kinase
a.24.18.1 - Oxygen-evolving enhancer protein 3,
a.24.10.1 - Aerobic respiration control sensor protein, ArcB
a.24.10.2 - Phosphorelay protein-like
a.24.10.3 - Chemotaxis protein CheA P1 domain
a.24.10.4 - Sensor-like histidine kinase YojN, C-terminal domain
a.24.10.5 - Phosphorelay protein luxU
a.24.10.6 - SphA-like
a.24.11.1 - Bacterial GAP domain
a.24.12.1 - Outer surface protein C (OspC)
a.24.19.1 - Flagellar export chaperone FliS
a.24.13.1 - Domain of the SRP/SRP receptor G-proteins
a.24.15.1 - FAD-dependent thiol oxidase
a.24.17.1 - Group V grass pollen allergen
a.24.16.2 - Family 1 bi-partite nucleotidyltransferase subunit
a.24.16.3 - HEPN domain
a.24.16.1 - Kanamycin nucleotidyltransferase (KNTase), C-terminal domain
a.24.16.4 - Glutamine synthase adenylyltransferase GlnE, domain 2
a.24.21.1 - RecG, N-terminal domain
a.24.20.1 - Colicin D immunity protein
a.24.22.1 - Nickel-containing superoxide dismutase, NiSOD
a.24.23.1 - Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain
a.24.24.1 - Domain from hypothetical 2610208m17rik protein
a.24.25.1 - TrmE connector domain
a.24.26.1 - YppE-like
a.24.27.1 - MW0975(SA0943)-like
a.24.28.1 - VPS28 C-terminal domain-like
a.24.29.1 - TM1646-like
a.142.1.1 - PTS-regulatory domain, PRD
a.25.1.1 - Ferritin
a.25.1.2 - Ribonucleotide reductase-like
a.25.1.3 - Manganese catalase (T-catalase)
a.25.1.4 - YciF-like
a.25.1.5 - half-ferritin
a.25.1.6 - PMT1231-like
a.25.1.7 - MiaE-like
a.25.1.8 - AMB4284-like
a.25.1.9 - Rv2844-like
a.25.2.2 - Cobalamin adenosyltransferase
a.25.2.1 - Hypothetical protein Ta1238
a.25.3.1 - ESAT-6 like
a.25.4.1 - PE
a.25.4.2 - PPE
a.25.5.1 - HP0062-like
a.25.6.1 - SO2669-like
a.26.1.1 - Long-chain cytokines
a.26.1.2 - Short-chain cytokines
a.26.1.3 - Interferons/interleukin-10 (IL-10)
a.27.1.1 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
a.28.1.1 - Acyl-carrier protein (ACP)
a.28.1.2 - Peptidyl carrier domain
a.28.1.3 - apo-D-alanyl carrier protein
a.28.2.1 - Colicin E immunity proteins
a.28.3.1 - Retrovirus capsid protein C-terminal domain
a.28.3.2 - SCAN domain
a.29.2.1 - Bromodomain
a.29.5.1 - alpha-ketoacid dehydrogenase kinase, N-terminal domain
a.29.3.1 - Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
a.29.3.2 - acyl-CoA oxidase C-terminal domains
a.29.6.1 - Plant invertase/pectin methylesterase inhibitor
a.29.7.1 - Mob1/phocein
a.29.8.1 - Carnobacteriocin B2 immunity protein
a.29.8.2 - EntA-Im
a.29.9.1 - LemA-like
a.29.10.1 - MAST3 pre-PK domain-like
a.29.11.1 - PA2201 N-terminal domain-like
a.29.12.1 - Nqo1C-terminal domain-like
a.29.13.1 - Bacillus cereus metalloprotein-like
a.29.14.1 - Ta0600-like
a.29.15.1 - DsbB-like
a.29.16.1 - IVS-encoded protein-like
a.29.17.1 - YqcC-like
a.30.1.1 - ROP protein
a.30.2.1 - Homodimeric domain of signal transducing histidine kinase
a.30.3.1 - Nonstructural protein ns2, Nep, M1-binding domain
a.30.4.1 - Dimerisation domain of CENP-B
a.30.5.1 - Hypothetical protein D-63
a.30.6.1 - HP1531-like
a.30.7.1 - BAS1536-like
a.30.8.1 - FHV B2 protein-like
a.31.1.1 - Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
a.273.1.1 - Hairy Orange domain
a.178.1.1 - Soluble domain of poliovirus core protein 3a
a.32.1.1 - Transcription factor IIA (TFIIA), alpha-helical domain
a.33.1.1 - Ectatomin subunits
a.34.1.1 - SinR repressor dimerisation domain-like
a.34.2.1 - Dimerization cofactor of HNF-1 alpha
a.34.3.1 - Docking domain A of the erythromycin polyketide synthase (DEBS)
a.34.4.1 - Adapter protein APS, dimerisation domain
a.35.1.1 - POU-specific domain
a.35.1.2 - Phage repressors
a.35.1.3 - SinR domain-like
a.35.1.4 - Cyanase N-terminal domain
a.35.1.5 - GalR/LacI-like bacterial regulator
a.35.1.6 - YdiL-like
a.35.1.7 - CUT domain
a.35.1.8 - Probable transcriptional regulator VC1968, N-terminal domain
a.35.1.9 - Bacteriophage CII protein
a.35.1.10 - NE0471 C-terminal domain-like
a.35.1.11 - PrgX N-terminal domain-like
a.35.1.12 - EDF1-like
a.35.1.13 - NE1354
a.36.1.1 - Signal peptide-binding domain
a.37.1.1 - A DNA-binding domain in eukaryotic transcription factors
a.38.1.1 - HLH, helix-loop-helix DNA-binding domain
a.38.2.1 - Docking domain B of the erythromycin polyketide synthase (DEBS)
a.274.1.1 - HAMP domain
a.39.1.1 - Calbindin D9K
a.39.1.2 - S100 proteins
a.39.1.10 - Polcalcin
a.39.1.3 - Osteonectin
a.39.1.4 - Parvalbumin
a.39.1.5 - Calmodulin-like
a.39.1.6 - Eps15 homology domain (EH domain)
a.39.1.9 - Cbp40 (plasmodial specific CaII-binding protein LAV1-2)
a.39.1.8 - Penta-EF-hand proteins
a.39.1.7 - EF-hand modules in multidomain proteins
a.39.1.11 - p25-alpha
a.39.2.1 - Insect pheromone/odorant-binding proteins
a.39.4.1 - Hypothetical protein MTH865
a.39.3.1 - Cloroperoxidase
a.40.1.1 - Calponin-homology domain, CH-domain
a.40.2.1 - X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain
a.40.3.1 - Hook domain
a.41.1.1 - Domain of poly(ADP-ribose) polymerase
a.42.1.1 - SWIB/MDM2 domain
a.162.1.1 - Pre-protein crosslinking domain of SecA
a.43.1.1 - Arc/Mnt-like phage repressors
a.43.1.3 - CopG-like
a.43.1.4 - Omega transcriptional repressor
a.43.1.5 - Met repressor, MetJ (MetR)
a.43.1.6 - NE0241-like
a.43.1.7 - SeqA N-terminal domain-like
a.43.1.8 - Trafficking protein A-like
a.43.1.9 - VCA0319-like
a.43.1.10 - VirC2-like
a.43.1.11 - PutA pre-N-terminal region-like
a.43.1.12 - MJ0366-like
a.45.1.1 - Glutathione S-transferase (GST), C-terminal domain
a.45.1.2 - Arc1p N-terminal domain-like
a.46.1.1 - Methionine synthase domain
a.46.2.1 - Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
a.46.3.1 - TM0693-like
a.186.1.1 - Circadian clock protein KaiA, C-terminal domain
a.186.1.2 - Phosphoserine phosphatase RsbU, N-terminal domain
a.47.1.1 - STAT
a.47.2.1 - t-snare proteins
a.47.3.1 - Cag-Z
a.47.4.1 - CAPPD, an extracellular domain of amyloid beta A4 protein
a.47.5.1 - FlgN-like
a.47.6.1 - MukF C-terminal domain-like
a.48.1.1 - N-terminal domain of cbl (N-cbl)
a.48.2.1 - Transferrin receptor-like dimerisation domain
a.48.3.1 - Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
a.48.4.1 - HIV integrase-binding domain
a.48.5.1 - PG0775 C-terminal domain-like
a.179.1.1 - Replisome organizer (g39p helicase loader/inhibitor protein)
a.229.1.1 - Hypothetical protein YqbG
a.275.1.1 - DnaD domain
a.49.1.1 - C-terminal domain of B transposition protein
a.187.1.1 - HAND domain of the nucleosome remodeling ATPase ISWI
a.180.1.1 - N-terminal, cytoplasmic domain of anti-sigmaE factor RseA
a.50.1.1 - Anaphylotoxins (complement system)
a.51.1.1 - Cytochrome c oxidase subunit h
a.163.1.1 - Crustacean CHH/MIH/GIH neurohormone
a.164.1.1 - C-terminal domain of DFF45/ICAD (DFF-C domain)
a.276.1.1 - BH2638-like
a.52.1.1 - Plant lipid-transfer and hydrophobic proteins
a.52.1.2 - Proteinase/alpha-amylase inhibitors
a.52.1.3 - Seed storage protein, 2S albumin
a.53.1.1 - p53 tetramerization domain
a.147.1.1 - Bcr-Abl oncoprotein oligomerization domain
a.54.1.1 - Domain of early E2A DNA-binding protein, ADDBP
a.55.1.1 - Prokaryotic DNA-bending protein
a.55.1.2 - DNA-binding domain (fragment?) of the TraM protein
a.241.1.1 - TraM-like
a.56.1.1 - CO dehydrogenase ISP C-domain like
a.57.1.1 - Protein HNS-dependent expression A; HdeA
a.144.1.1 - PABC (PABP) domain
a.144.2.1 - Ribosomal protein L20
a.58.1.1 - Chemotaxis receptor methyltransferase CheR, N-terminal domain
a.242.1.1 - Dcp2 box A domain
a.243.1.1 - TyeA-like
a.243.1.2 - YopR Core
a.243.1.3 - LcrE-like
a.230.1.1 - YugE-like
a.188.1.1 - PWI domain
a.59.1.1 - PAH2 domain
a.165.1.1 - Myosin phosphatase inhibitor 17kDa protein, CPI-17
a.189.1.1 - XPC-binding domain
a.213.1.1 - YfiT-like putative metal-dependent hydrolases
a.213.1.2 - DinB-like
a.213.1.3 - Sden0562-like
a.213.1.4 - Maleylpyruvate isomerase-like
a.231.1.1 - EspA-like
a.231.1.2 - EspA chaperone CesA
a.214.1.1 - NblA-like
a.244.1.1 - EF2947-like
a.245.1.1 - EB1 dimerisation domain-like
a.60.1.1 - Pointed domain
a.60.1.2 - SAM (sterile alpha motif) domain
a.60.1.3 - Variant SAM domain
a.60.2.1 - DNA helicase RuvA subunit, middle domain
a.60.2.3 - Excinuclease UvrC C-terminal domain
a.60.2.2 - NAD+-dependent DNA ligase, domain 3
a.60.2.4 - Topoisomerase V repeat domain
a.60.2.5 - Hef domain-like
a.60.2.6 - Tex HhH-containing domain-like
a.60.2.7 - ComEA-like
a.60.3.1 - C-terminal domain of RNA polymerase alpha subunit
a.60.4.1 - DNA repair protein Rad51, N-terminal domain
a.60.4.2 - NusA extra C-terminal domains
a.60.4.3 - Hypothetical protein AF1548, C-terminal domain
a.60.5.1 - Barrier-to-autointegration factor, BAF
a.60.6.1 - DNA polymerase beta, N-terminal domain-like
a.60.12.1 - DNA polymerase beta-like, second domain
a.60.12.2 - PsbU-like
a.60.7.1 - 5' to 3' exonuclease, C-terminal subdomain
a.60.8.1 - HRDC domain from helicases
a.60.8.2 - RNA polymerase II subunit RBP4 (RpoF)
a.60.8.3 - RNase D C-terminal domains
a.60.8.4 - EXOSC10 HRDC domain-like
a.60.9.1 - lambda integrase-like, N-terminal domain
a.60.10.1 - Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
a.60.11.1 - Hypothetical protein YjbJ
a.60.13.1 - Putative methyltransferase TM0872, insert domain
a.60.14.1 - eIF2alpha middle domain-like
a.60.15.1 - YozE-like
a.60.16.1 - GspK insert domain-like
a.61.1.1 - Immunodeficiency virus matrix proteins
a.61.1.2 - HTLV-II matrix protein
a.61.1.3 - Mason-Pfizer monkey virus matrix protein
a.61.1.4 - GAG polyprotein M-domain
a.61.1.5 - EIAV matrix antigen
a.61.1.6 - MMLV matrix protein-like
a.190.1.1 - Flavivirus capsid protein C
a.62.1.1 - Hepatitis B viral capsid (hbcag)
a.63.1.1 - Apolipophorin-III
a.191.1.1 - Methenyltetrahydrofolate cyclohydrolase-like
a.215.1.1 - A middle domain of Talin 1
a.216.1.1 - I/LWEQ domain
a.232.1.1 - RNA-binding protein She2p
a.246.1.1 - Hyaluronidase post-catalytic domain-like
a.246.2.1 - TTHA0068-like
a.246.3.1 - FLJ32549 domain-like
a.247.1.1 - YoaC-like
a.64.1.3 - Saposin B
a.64.1.1 - NKL-like
a.64.1.4 - Ameobapore A
a.64.1.2 - Swaposin
a.64.2.1 - Bacteriocin AS-48
a.65.1.1 - Annexin
a.277.1.1 - TAFH domain-like
a.66.1.1 - Transducin (alpha subunit), insertion domain
a.68.1.1 - Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
a.69.1.1 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
a.69.2.1 - Ypt/Rab-GAP domain of gyp1p
a.69.3.1 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
a.69.4.1 - BH3980-like
a.70.1.1 - N-terminal domain of the delta subunit of the F1F0-ATP synthase
a.70.2.1 - Cas Cmr5-like
a.71.1.1 - ERP29 C domain-like
a.71.2.1 - Helical domain of Sec23/24
a.72.1.1 - Functional domain of the splicing factor Prp18
a.73.1.1 - Retrovirus capsid protein, N-terminal core domain
a.278.1.1 - PSF1 N-terminal domain-like
a.278.1.2 - PSF2 C-terminal domain-like
a.278.1.3 - PSF3 C-terminal domain-like
a.278.1.4 - SLD5 N-terminal domain-like
a.279.1.1 - Jann4075-like
a.74.1.1 - Cyclin
a.74.1.2 - Transcription factor IIB (TFIIB), core domain
a.74.1.3 - Retinoblastoma tumor suppressor domains
a.148.1.1 - Arp2/3 complex 21 kDa subunit ARPC3
a.149.1.1 - RNase III catalytic domain-like
a.149.1.2 - PF0609-like
a.75.1.1 - Ribosomal protein S7
a.80.1.1 - DNA polymerase III clamp loader subunits, C-terminal domain
a.80.1.2 - MgsA/YrvN C-terminal domain-like
a.160.1.1 - Poly(A) polymerase, PAP, middle domain
a.160.1.2 - 2'-5'-oligoadenylate synthetase 1, OAS1, second domain
a.160.1.3 - Archaeal tRNA CCA-adding enzyme substrate-binding domain
a.160.1.4 - RNA editing terminal uridyl transferase 2, RET2, domain 2
a.160.1.5 - AadK C-terminal domain-like
a.150.1.1 - Anti-sigma factor AsiA
a.181.1.1 - Antibiotic binding domain of TipA-like multidrug resistance regulators
a.217.1.1 - Surp module (SWAP domain)
a.218.1.1 - YgfY-like
a.219.1.1 - Hypothetical protein YhaI
a.220.1.1 - Hypothetical protein At3g22680
a.248.1.1 - SP0561-like
a.280.1.1 - RbcX-like
a.281.1.1 - YmcA-like
a.281.1.2 - YheA-like
a.282.1.1 - RPA2825-like
a.283.1.1 - Emsy N terminal (ENT) domain-like
a.249.1.1 - YfmB-like
a.192.1.1 - N-terminal domain of adenylylcyclase associated protein, CAP
a.250.1.1 - IpaD-like
a.76.1.1 - Iron-dependent repressor protein, dimerization domain
a.151.1.1 - Glutamyl tRNA-reductase dimerization domain
a.193.1.1 - GRIP domain
a.238.1.1 - BAR domain
a.238.1.2 - Arfaptin, Rac-binding fragment
a.238.1.3 - IMD domain
a.238.1.4 - FCH domain
a.194.1.1 - L27 domain
a.221.1.1 - Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
a.251.1.1 - Phage replication organizer domain
a.284.1.1 - YejL-like
a.252.1.1 - CSE2-like
a.252.1.2 - MED7 hinge region
a.77.1.2 - DEATH domain, DD
a.77.1.4 - DEATH effector domain, DED
a.77.1.3 - Caspase recruitment domain, CARD
a.77.1.5 - Pyrin domain, PYD
a.78.1.1 - GntR ligand-binding domain-like
a.253.1.1 - AF0941-like
a.79.1.1 - Antitermination factor NusB
a.79.1.2 - Hypothetical protein MG027
a.79.1.3 - RmsB N-terminal domain-like
a.195.1.1 - YutG-like
a.81.1.1 - N-terminal domain of DnaB helicase
a.196.1.1 - Invasion protein A (SipA) , C-terminal actin binding domain
a.285.1.1 - MtlR-like
a.83.1.1 - Guanido kinase N-terminal domain
a.84.1.1 - Scaffolding protein gpD of bacteriophage procapsid
a.85.1.1 - Hemocyanin, N-terminal domain
a.286.1.1 - Sama2622-like
a.86.1.1 - Hemocyanin middle domain
a.86.1.2 - Catechol oxidase
a.87.1.1 - DBL homology domain (DH-domain)
a.88.1.1 - LigA subunit of an aromatic-ring-opening dioxygenase LigAB
a.166.1.1 - RuBisCo LSMT C-terminal, substrate-binding domain
a.89.1.1 - Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
a.198.1.1 - YcfC-like
a.254.1.1 - PA2201 C-terminal domain-like
a.255.1.1 - Rv1873-like
a.256.1.1 - RUN domain
a.257.1.1 - SipA N-terminal domain-like
a.90.1.1 - Transcription factor STAT-4 N-domain
a.287.1.1 - COG3793-like
a.287.1.2 - PG1108-like
a.91.1.1 - Regulator of G-protein signaling, RGS
a.168.1.1 - SopE-like GEF domain
a.154.1.1 - Variable surface antigen VlsE
a.199.1.1 - YgfB-like
a.200.1.1 - Hypothetical protein MTH393
a.258.1.1 - PG0816-like
a.288.1.1 - UraD-like
a.289.1.1 - Sec63 N-terminal domain
a.289.1.2 - Achaeal helicase C-terminal domain
a.92.1.1 - Carbamoyl phosphate synthetase, large subunit connection domain
a.93.1.1 - CCP-like
a.93.1.3 - Catalase-peroxidase KatG
a.93.1.2 - Myeloperoxidase-like
a.94.1.1 - Ribosomal protein L19 (L19e)
a.290.1.1 - PSPTO4464-like
a.182.1.1 - GatB/YqeY domain
a.182.1.2 - GatB/GatE C-terminal domain-like
a.233.1.1 - YfbU-like
a.291.1.1 - MG296-like
a.234.1.1 - Hypothetical protein MPN330
a.211.1.1 - HD domain
a.211.1.2 - PDEase
a.211.1.3 - modified HD domain
a.211.1.4 - MioX-like
a.211.1.5 - Ppx associated domain
a.202.1.1 - Superantigen MAM
a.95.1.1 - Influenza virus matrix protein M1
a.96.1.1 - Endonuclease III
a.96.1.2 - Mismatch glycosylase
a.96.1.4 - 3-Methyladenine DNA glycosylase I (Tag)
a.96.1.5 - 3-Methyladenine DNA glycosylase III (MagIII)
a.96.1.3 - DNA repair glycosylase, 2 C-terminal domains
a.96.1.6 - AgoG-like
a.97.1.1 - C-terminal domain of glutamyl-tRNA synthetase (GluRS)
a.97.1.2 - C-terminal domain of class I lysyl-tRNA synthetase
a.203.1.1 - Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
a.98.1.1 - R1 subunit of ribonucleotide reductase, N-terminal domain
a.169.1.1 - BEACH domain
a.99.1.1 - Cryptochrome/photolyase FAD-binding domain
a.100.1.1 - Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
a.100.1.9 - Mannitol 2-dehydrogenase
a.100.1.2 - Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI)
a.100.1.3 - HCDH C-domain-like
a.100.1.8 - Conserved hypothetical protein MTH1747
a.100.1.4 - UDP-glucose/GDP-mannose dehydrogenase dimerisation domain
a.100.1.5 - N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
a.100.1.6 - Glycerol-3-phosphate dehydrogenase
a.100.1.7 - Ketopantoate reductase PanE
a.100.1.10 - ProC C-terminal domain-like
a.100.1.11 - HMD dimerization domain-like
a.100.1.12 - TyrA dimerization domain-like
a.101.1.1 - Uteroglobin-like
a.102.1.1 - Glucoamylase
a.102.1.2 - Cellulases catalytic domain
a.102.1.3 - N-acylglucosamine (NAG) epimerase
a.102.1.4 - Glycosyltransferase family 36 C-terminal domain
a.102.1.5 - Bacterial glucoamylase C-terminal domain-like
a.102.1.6 - Hypothetical protein YteR
a.102.1.7 - Glycosyl Hydrolase Family 88
a.102.1.8 - CPF0428-like
a.102.1.9 - Trehalase-like
a.102.2.1 - Class I alpha-1;2-mannosidase, catalytic domain
a.102.3.1 - Alginate lyase A1-III
a.102.3.2 - Hyaluronate lyase-like catalytic, N-terminal domain
a.102.5.1 - Family 10 polysaccharide lyase
a.102.4.1 - Terpenoid cyclase N-terminal domain
a.102.4.2 - Terpene synthases
a.102.4.3 - Protein prenyltransferases
a.102.4.4 - Complement components
a.102.6.1 - LanC-like
a.103.1.1 - Citrate synthase
a.104.1.1 - Cytochrome P450
a.145.1.1 - Flagellar transcriptional activator FlhD
a.292.1.1 - HP0242-like
a.293.1.1 - SMc04008-like
a.108.1.1 - Ribosomal protein L7/12, oligomerisation (N-terminal) domain
a.109.1.1 - Class II MHC-associated invariant chain ectoplasmic trimerization domain
a.110.1.1 - Aldehyde ferredoxin oxidoreductase, C-terminal domains
a.111.1.1 - Type 2 phosphatidic acid phosphatase, PAP2
a.111.1.2 - Haloperoxidase (bromoperoxidase)
a.111.1.3 - Chloroperoxidase
a.170.1.1 - BRCA2 helical domain
a.171.1.1 - BRCA2 tower domain
a.155.1.1 - H-NS histone-like proteins
a.177.1.1 - Sigma2 domain of RNA polymerase sigma factors
a.113.1.1 - DNA repair protein MutS, domain III
a.172.1.1 - Helical scaffold and wing domains of SecA
a.204.1.2 - MazG-like
a.204.1.3 - AF0060-like
a.204.1.1 - Type II deoxyuridine triphosphatase
a.204.1.4 - HisE-like (PRA-PH)
a.205.1.1 - Hsp90 co-chaperone CDC37
a.183.1.1 - Nop domain
a.259.1.1 - YidB-like
a.114.1.1 - Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
a.115.1.1 - Orbivirus capsid
a.115.1.3 - Phytoreovirus capsid
a.115.1.2 - vp6, the major capsid protein of group A rotavirus
a.206.1.1 - P40 nucleoprotein
a.260.1.1 - Rhabdovirus nucleocapsid protein
a.116.1.1 - BCR-homology GTPase activation domain (BH-domain)
a.116.1.2 - p120GAP domain-like
a.117.1.1 - Ras GEF
a.146.1.1 - Telomeric repeat binding factor (TRF) dimerisation domain
a.173.1.1 - Poly A polymerase C-terminal region-like
a.118.1.1 - Armadillo repeat
a.118.1.10 - Clathrin adaptor core protein
a.118.1.2 - HEAT repeat
a.118.1.14 - MIF4G domain-like
a.118.1.13 - PHAT domain
a.118.1.15 - Mo25 protein
a.118.1.7 - Leukotriene A4 hydrolase C-terminal domain
a.118.1.3 - Clathrin heavy chain proximal leg segment
a.118.1.4 - Clathrin heavy-chain linker domain
a.118.1.5 - Leucine-rich repeat variant
a.118.1.6 - Phoshoinositide 3-kinase (PI3K) helical domain
a.118.1.8 - Pumilio repeat
a.118.1.9 - Regulatory subunit H of the V-type ATPase
a.118.1.16 - PBS lyase HEAT-like repeat
a.118.1.17 - BC3264-like
a.118.1.18 - Eukaryotic translation initiation factor 3 subunit 12, eIF3k, N-terminal domain
a.118.1.19 - Exportin HEAT-like repeat
a.118.1.20 - B56-like
a.118.1.21 - HspBP1 domain
a.118.1.22 - GUN4-associated domain
a.118.1.23 - Diap1 N-terninal region-like
a.118.1.24 - Plakophilin 1 helical region
a.118.1.25 - RPA1889-like
a.118.22.1 - IP3 receptor type 1 binding core, domain 2
a.118.21.1 - Chemosensory protein Csp2
a.118.3.1 - Sec7 domain
a.118.4.1 - Lipovitellin-phosvitin complex, superhelical domain
a.118.5.1 - Bacterial muramidases
a.118.15.1 - Aconitase B, N-terminal domain
a.118.18.1 - HCP-like
a.118.6.1 - Protein prenylyltransferase
a.118.7.1 - 14-3-3 protein
a.118.8.1 - Tetratricopeptide repeat (TPR)
a.118.8.2 - Transcription factor MalT domain III
a.118.8.3 - BTAD-like
a.118.8.4 - PrgX C-terminal domain-like
a.118.8.5 - Atu0120-like
a.118.8.6 - SusD-like
a.118.8.7 - HAT/Suf repeat
a.118.8.8 - CT2138-like
a.118.9.1 - ENTH domain
a.118.9.2 - VHS domain
a.118.9.3 - Phosphoinositide-binding clathrin adaptor, N-terminal domain
a.118.9.4 - RPR domain (SMART 00582 )
a.118.16.1 - Translin
a.118.12.1 - Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain
a.118.13.1 - Arp2/3 complex 16 kDa subunit ARPC5
a.118.14.1 - FliG
a.118.17.1 - Cullin repeat
a.118.17.2 - Exocyst complex component
a.118.19.1 - C-terminal domain of Ku80
a.118.20.1 - Hypothetical protein ST1625
a.118.11.1 - Cytochrome c oxidase subunit E
a.118.23.1 - USP8 N-terminal domain-like
a.118.24.1 - Pseudo ankyrin repeat
a.118.25.1 - TROVE domain-like
a.118.26.1 - MgtE N-terminal domain-like
a.261.1.1 - GUN4-like
a.119.1.1 - Plant lipoxigenases
a.119.1.2 - Animal lipoxigenases
a.120.1.1 - gene 59 helicase assembly protein
a.121.1.1 - Tetracyclin repressor-like, C-terminal domain
a.157.1.1 - Skp1 dimerisation domain-like
a.158.1.1 - F-box domain
a.123.1.1 - Nuclear receptor ligand-binding domain
a.124.1.1 - Phospholipase C
a.124.1.2 - P1 nuclease
a.235.1.1 - ATP-dependent DNA ligase DNA-binding domain
a.236.1.1 - DNA primase DnaG, C-terminal domain
a.262.1.1 - PriB N-terminal domain-like
a.222.1.1 - VPS9 domain
a.223.1.1 - TF C-terminus
a.223.1.2 - Porin chaperone SurA, peptide-binding domain
a.263.1.1 - DNA terminal protein
a.224.1.1 - Glycolipid transfer protein, GLTP
a.225.1.1 - Hypothetical protein MG354
a.264.1.1 - Duffy binding domain
a.265.1.1 - Fic-like
a.226.1.1 - Her-1
a.227.1.1 - ERO1-like
a.126.1.1 - Serum albumin-like
a.127.1.1 - L-aspartase/fumarase
a.127.1.2 - HAL/PAL-like
a.207.1.1 - Formin homology 2 domain (FH2 domain)
a.128.1.1 - Isoprenyl diphosphate synthases
a.128.1.2 - Squalene synthase
a.128.1.3 - Terpenoid cyclase C-terminal domain
a.128.1.4 - Aristolochene/pentalenene synthase
a.128.1.5 - Trichodiene synthase
a.129.1.1 - GroEL chaperone, ATPase domain
a.129.1.2 - Group II chaperonin (CCT, TRIC), ATPase domain
a.184.1.1 - TorD-like
a.130.1.1 - Dimeric chorismate mutase
a.130.1.2 - Allosteric chorismate mutase
a.130.1.3 - monomeric chorismate mutase
a.130.1.4 - Secreted chorismate mutase-like
a.131.1.1 - Peridinin-chlorophyll protein
a.132.1.1 - Eukaryotic type heme oxygenase
a.132.1.2 - Heme oxygenase HemO (PigA)
a.132.1.3 - TENA/THI-4
a.132.1.4 - PqqC-like
a.266.1.1 - Bacterial tryptophan 2,3-dioxygenase
a.266.1.2 - Indoleamine 2,3-dioxygenase-like
a.152.1.2 - CMD-like
a.152.1.1 - AhpD
a.152.1.3 - Atu0492-like
a.152.1.4 - TTHA0727-like
a.174.1.1 - Double Clp-N motif
a.175.1.1 - Orange carotenoid protein, N-terminal domain
a.208.1.1 - DhaL-like
a.209.1.1 - ADP-ribosylglycohydrolase
a.267.1.1 - Topoisomerase V catalytic domain-like
a.268.1.1 - PTPA-like
a.294.1.1 - Tex N-terminal region-like
a.295.1.1 - AGR C 984p-like
a.296.1.1 - PMT central region-like
a.269.1.1 - FtsH protease domain-like
a.185.1.1 - Gametocyte protein Pfg27
a.176.1.1 - N-terminal domain of bifunctional PutA protein
a.17.1.1 - p8-MTCP1
a.17.1.2 - COX17-like
a.133.1.2 - Vertebrate phospholipase A2
a.133.1.1 - Insect phospholipase A2
a.133.1.3 - Prokaryotic phospholipase A2
a.134.1.1 - Fungal elicitin
a.135.1.1 - Tetraspanin
a.228.1.1 - GDNF receptor-like
a.136.1.1 - FinO-like
a.153.1.1 - Nuclear receptor coactivator interlocking domain
a.270.1.1 - Hermes dimerisation domain
a.210.1.1 - Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain
a.137.1.1 - Ribosomal protein L39e
a.137.2.1 - Methanol dehydrogenase subunit
a.137.3.1 - Transducin (heterotrimeric G protein), gamma chain
a.137.4.1 - Fe-only hydrogenase smaller subunit
a.137.5.1 - Moesin tail domain
a.137.7.1 - Proteinase A inhibitor IA3
a.137.8.1 - Epsilon subunit of mitochondrial F1F0-ATP synthase
a.137.9.1 - Quinohemoprotein amine dehydrogenase C chain
a.137.10.1 - Stathmin
a.137.11.1 - Anti-sigma factor FlgM
a.137.12.1 - Glu-tRNAGln amidotransferase C subunit
a.137.13.1 - RelB-like
a.137.14.1 - Lag-3 N-terminal region
a.137.15.1 - Lipase chaperone LifO-like
a.138.1.1 - Cytochrome c3-like
a.138.1.2 - Photosynthetic reaction centre (cytochrome subunit)
a.138.1.3 - Di-heme elbow motif