The sequences which have been used as reference for the generation of profiles for the family YmdB are highlighted in red. The profiles and the reference sequences for this family are given in a tar zipped format (Profiles are in ASN.1 format).

Download the tar zipped file.
Click here for help on generation of RPS-BLAST databases from the files given in above link

A0L4X8_MAGSM/14-267                 LILGDIVGRPGRNVVNEHLADLKKEL-ELDLVVANAENA-T-NGNGLTPKTADQLFNMGID
A1BAM9_PARDP/4-260                  LYLGDVMGRAGRRAIAEGLGPLKERL-GVDFTIVNGENA-S-GGMGLTGGHAKLLLDAGAD
A1QZQ8_BORT9/6-257                  LIAGEVVGKPGIVVIKNFLSSFKQKK-GIDFVISGNNFT-T-GFRGLCKRHAFLLKKYGVD
A1QZU1_BORT9/17-269                 LIIGDVIGNGGLKKVFFNLKNLKEKY-NIDLTIVNGENS-S-GGFGITPEIAENLFKAGVN
A1URD5_BARBK/4-260                  LFLGDIVGATGCAAVFYALPRLIQQW-QLDFVVVNGENA-S-HGFGLSQETYHSLLTAGAN
A3JWP9_9RHOB/4-260                  LYLGDVVGRAGRSAVTEWLPKLRAQW-GLDFVVVNGENA-T-NGAGLSPDHAKGILLAGAD
A3PM46_RHOS1/16-271                 LFLGDVMGRAGRSAVAERLPALRTEW-GLDFVVVNGENA-S-SGAGITADHAKKLLAAGAD
A3TYR5_9RHOB/4-260                  LFLGDVVGRSGRTAIVDHLPRLRDAW-KLDFVVVNGENA-T-NGAGLSPDHARILLDAGAD
A3UGX3_9RHOB/4-260                  AFFGDVVGKSGRDGLCDALPDLRKRL-QLDFVVVNAENA-A-GGFGITEKTANEMYDAGAD
A3V9L3_9RHOB/4-260                  LFLGDVMGRAGRQAISDRLPTLRRDW-KLDFVVVNGENA-T-NGAGLSEAHAKLIFEAGAD
A4EIW9_9RHOB/4-260                  LFLGDVMGRAGRAAITTHLPRLREAW-KLDFVVVNGENA-T-SGMGLSGDHANILLDAGAD
A4TWG7_9PROT/4-260                  LYLGDIVGRAGRDVVVANLGKARERL-RLDFVVANGENA-A-HGFGITPKLCDDLYAAGVD
A4X3Q2_SALTO/4-259                  LFIGDIVGDEGTRYLVDRLPELRARH-TVDLVVANAENSAA-DGLGMGRVQVEQLLSGGVD
A5D2N7_PELTS/4-256                  LMIGDVVGRSGRRAVKANLSCLKKEF-GLDLVIANGENA-A-GGKGITRDVAQELFSAGVD
A5ERK6_BRASB/4-259                  LFVGDVVGRAGRSAVSDHLPGLIRDW-ALDLVIVNGENA-A-GGFGITEAIYQELVDAGAD
A5FPE5_DEHSB/4-252                  LVIGDVIGKPGRDALRDILPGLKQEY-KIDFTVINGENT-A-GGIGITPATAQDLISAGAD
A5FYI9_ACICJ/4-258                  LYLGDVVGRSGREAVISTLPRLRHEL-GIDVAVVNGENA-S-HGFGLAPDMADALFAAGAD
A6DVK6_9RHOB/4-260                  LFLGDVMGRAGRAAVAERLPKLRDAW-KLDFVVVNGENA-S-GGMGLTAAHAKDLFEAGAD
A6FQG1_9RHOB/4-260                  LFLGDVVGRAGRAAVADVLPRLRQEW-RLDFVVVNGENA-S-GGMGLTGDHARALLQAGAD
A6NQM7_9FIRM/6-256                  LAVGDVVSDDGLNYLSKHLRQVKRLH-DVHFTVVNGENA-S--GVGILPRQAQDIFDAGAD
A6Q507_NITSB/4-253                  GFIGDIVGRPGRRMIKRYLQDIRKKE-NLDFVIANYENA-S-HGFGLTPKNAKELFNAGID
A6QBX9_SULNB/4-254                  GFIGDVVGKPGRLMIKRHLRRLQQEH-FIDFTIANYENA-S-HGFGLTQKNCDELLGYGID
A6QKK9_ONYPH/4-250                  MFIGDIYGNPGISYFAEKVGFLKETY-KPNLIIANAENA-D-NGKGLSFKIYKKLQKLGVD
A7H9A7_ANADF/17-271                 LFLGDVFGKPGRQAVQRLVPRLIARE-GLDLVIANAENS-A-SGIGVTPDTADELLAAEVD
A7HUZ3_PARL1/4-258                  LFMGDIVGRSGRDALVAELPVLRREL-ALDFVVINGENA-A-GGFGITGAICDDIFDAGAD
A7IJU8_XANP2/4-259                  LFLGDVVGRPGRECVVSRLPDLVSDW-KLDLVVVNGENA-A-GGFGITEAIYGEILAAGAD
A7VZD7_9CLOT/17-268                 LCIGDVVGSIGCQFLRQRLPSLKKLK-SVDLVIANGENS-A-DGNGLTPASAGYLFHSGVD
A8LJ06_DINSH/4-260                  LFLGDVMGRAGRAAVAETLPRMKAAW-KIDFAVVNGENA-S-NGAGLTPDHAKGLLEAGAD
A8RC54_9FIRM/10-259                 LFLGDIVGASGRDVVRQHLSSLKERY-EIDLVVANGENS-A-HGKGITQKIYRQLLDMGID
A8TXE0_9PROT/4-259                  LFLGDVVGRSGRTVVTERLPGLIRDL-ATDFVICNGENA-A-GGFGITAKICAELYESGVD
A8U9N4_9LACT/4-256                  LFIGDVVGSMGREMVHDYLPKLKKMY-KPQVTILNGENA-A-AGRGITEKIYKGFLQDGVD
A8URW8_9AQUI/4-255                  LIIGDIIGRPGRRAVYRFLEEK--GG-GFDVVLANVENA-A-GGFGVTKKVYEELKSHGID
A9CFK7_AGRT5/4-260                  LFLGDMVGKTGRTAVWDRLPGLISDL-KLDFVIVNGENA-A-GGFGITEDIFLETINAGAD
A9H7X4_GLUDA/4-259                  LFLGDIVGRTGRDAVIAALPGLRRDL-RLDLVVVNGENA-S-HGFGLSLSIAQNLFAAGTD
A9IXT8_BART1/4-260                  LFLGDIVGNTGCKVVFEHLPQLIEKW-QLDFVVVNGENA-S-NGFGLKQETYQDLLMAGVD
A9NGL8_ACHLI/4-248                  LFIGDIYGDPGIDYLLENITYLRQTY-QPNLIIANAENS-A-NGRGINKKIYKKLMQAGIS
A9VS21_BACWK/4-255                  LFVGDVVGSPGRDMIQQYVPALKKKY-TPTVTIINGENA-A-GGRGITEKIYRNFLECGAQ
B0N114_9FIRM/4-250                  LFIGDVFGSIGREMIEDYLHRIVKDN-QIDFVIANVENT-S-HGKGLLKRHYDELSFQGIQ
B0SUM9_CAUSK/4-261                  AFFGDVVGKSGRDGLADHLPALRRQL-QLEFVIINAENA-A-AGFGITENTARELFEAGAD
B0VGJ6_CLOAI/4-265