The sequences which have been used as reference for the generation of profiles for the family Neurochondrin are highlighted in red. The profiles and the reference sequences for this family are given in a tar zipped format (Profiles are in ASN.1 format).

Download the tar zipped file.
Click here for help on generation of RPS-BLAST databases from the files given in above link

NCDN_CHICK/4-610                    GPGAATLKKCLEVLRDARNDSEQLAALLLVTKAVRAGDLDSKTRRQIF---DAIGFTFPNR
NCDN_DROME/2-631                    TDVPEPVRKCASLLKGTKSDTEKFAALFMVTKLVKGKDCNAAGKKLLF---EAIGFPFLKK
NCDN_RAT/30-637                     ESRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIF---DAVGFTFPNR
NCDN_XENLA/11-627                   EVNNLALEKCLKVLQEAQTDNEQFAALLLVTKCAQAQEINNETRRRIF---DAVGFTFPNR
Q69QZ3_ORYSJ/15-573                 PTTAPAFEECLRLLRGER-DEQKLAGLLVAANLCRAGDAASVVE--VY---RAVGPRFLRR
Q7RYX2_NEUCR/18-610                 TGQPDPIQNAQTLLRAKD-DTSRFVGLALLKSVLDNSEELRNNQEAVRGLWKSVPSKFLDR
Q8VZF7_ARATH/7-560                  EERSPSLDDCLKLLKGER-DEQRLAGLLLVTKFCKNDDIVSLNK--VY---EAVGTHFLDR
YCG2_SCHPO/60-540                   RGSMELLENCFSLLHAQD-DTSKFVSLTMLAKLLNDHP------NLIFKCWERMDMKFLDR


NCDN_CHICK/4-610                    LLSSRQ---APPGC----PEHTFRALGLTLLACFCT--EPELAGHSQVLNKIPTFADVLLS
NCDN_DROME/2-631                    LLVSKD---LPNDC----PPLVYKSVALSILTCFCQ--EEELATHKDIIDAIPTLLEIVEQ
NCDN_RAT/30-637                     LLTTKE---APDGC----PDHVLRALGVALLACFCS--DPELASHPQVLNKIPILCTFLTA
NCDN_XENLA/11-627                   LLFSNS---VPEGC----PQNLFKSLGITLLACFST--DPVLAVHPQVVNKIPIFNETINI
Q69QZ3_ORYSJ/15-573                 LLNTGL---GKVEGGKEEDREAYLRLSVTVLSGLAR--FPEVAADEGVVSTVPLIAEIVSK
Q7RYX2_NEUCR/18-610                 LIKTGSRQQSQSEGGGNKNARDMLDLAVAIIHTFAALVPEDNKRDSRFTERIPHLVACLLN
Q8VZF7_ARATH/7-560                  LFRTGS---GSGDG--VDNRDVYLQISITVLAAFCR--VPEIASSEEMVSRIPLIVEVMSK
YCG2_SCHPO/60-540                   LLLS--------------THYEYVDLGVSILLAFCS--EEAILRSYEVKKRVSTLLQCCLK


NCDN_CHICK/4-610                    PCQPDC---TSMVDDAYQCLAAVL-ATPRGPREMVTKGAASALCQAYVN---GGYGSERAL
NCDN_DROME/2-631                    ADDEDYEDNLIVVSEAYSCLKSIA-SHEPGQQALLATGAIPKMSQIYSA---QSFQTDEAL
NCDN_RAT/30-637                     RGDPDDAARRSMIDDTYQCLTAVA-GTPRGPRHLIAGGTVSALCQAYLG---HGYGFDQAL
NCDN_XENLA/11-627                   SCQSGNKEVVSMVEDAYQCLLGIL-ASPQGPKNLLSHGSIPYLCQAYMN---RNHFWEKAL
Q69QZ3_ORYSJ/15-573                 SSD------LAITEECFELLSLIAIASDGGAHTFCEPGVMDMLFLQISNFPDGSRCLELAI
Q7RYX2_NEUCR/18-610                 CSN-------ETTKLVLETLSALV-TTPDGAKAFIALDDVTTLIEIAPS---QPLVLDIFF
Q8VZF7_ARATH/7-560                  GIT------TNMLEDCYELLYLVSTACEAGLMTLINSGGLRVIAPQMSELPDGSHAMEVAI
YCG2_SCHPO/60-540                   HYD-----------LCIPVICTLS-SNPKSAKYLLY----------YTSFIINEFPFEQAF


NCDN_CHICK/4-610                    ALLLGLLAVSEAKCWQ-RDAPHLLAVLSKLSEEFVRAEDGSQFEL---CELLPRFIPLS--
NCDN_DROME/2-631                    HLIVLLVKQFGVVSWP-EDPTAFHALIQRIALDMETDDTERKYEL---CRILADILITCRR
NCDN_RAT/30-637                     ALLVGLLAAAETQCWK-EAEPDLLAVLRGLSEDFQRAEDASKFEL---CQLLPLFLPPTTV
NCDN_XENLA/11-627                   QILTSLLTVLPPKCWK-KSCTDLQLLLTRLSEEFGKEEGEWKFQL---ADLLPIFLPPS--
Q69QZ3_ORYSJ/15-573                 HLMQLLVHKIRIDNMTVEKLQGMTSMVTSLARLFAVLHTTVKFEA---LHMLTALLSQKES
Q7RYX2_NEUCR/18-610                 YAWLNATSSSVSSSAE-DKDLLRTKIDHTITALVSSFKGTDAVTL---LDFLANLLPRL--
Q8VZF7_ARATH/7-560                  KILQLLVSKLDCGSMTIERFLELSLVIAAVARQFAVLHNALKFEA---LHLLSAVFSSEYS
YCG2_SCHPO/60-540                   EILSNALYALD-------------NVQTYMRPIFQGIDKRRGWKLDCTFSFFSDLFSRF--


NCDN_CHICK/4-610                    PPL---AEVSQGSECVRQLYKGLASILGSKLSQSQRDPALKLAASLTQA---CGSEWIPAG
NCDN_DROME/2-631                    EIV---INSLEGQIWPESLFKGCGDILKAKIGPKQRDPALHLIATTLHV---LGIQWAFMD
NCDN_RAT/30-637                     PP-----------ECHRDLQAGLARILGSKLSSWQRNPALKLAARLAHA---CGSDWIPVG
NCDN_XENLA/11-627                   PIL---LETSWGKQCLKQLCKGLLKILSNKLSISQRDPALKLAACLANS---YGSSWIMAE
Q69QZ3_ORYSJ/15-573                 P-LHDALRSVPSMIWKCQIRVGITAVLQNRVVSSEKLQALLLAECMMSI---LGENWLSEE
Q7RYX2_NEUCR/18-610                 ----EPQVSPQNPKWLPTLNLFIRNLVSSRPTPAGRAAYTNLSAALLEVYPSVAPQLLFTD
Q8VZF7_ARATH/7-560                  ELLHEPLRSMPDNNWADYMRTGVVAILQNRVAPSEKLHALILAENMMSI---LGEKWLLGG
YCG2_SCHPO/60-540                   -----PVQSWYSEAIRANLQPLMDAVVERFITDKNLSSATVILSNLLKA---AGPASIMPN


NCDN_CHICK/4-610                    ST--------------GSKFLALLVNLACVEVRLTLEE------------PEPLEVEGKKE
NCDN_DROME/2-631                    EQ---------------KTFFLQLLQLGAIEVRMQMDE------------KKLETTFKQAE
NCDN_RAT/30-637                     SS--------------GSKFLALLVNLACVEVRLALEE---------------TGTEVKED
NCDN_XENLA/11-627                   NK------------VVRSRFLALIVNLACVEVRMALEE--------------PEPLTSRQS
Q69QZ3_ORYSJ/15-573                 YKVPDDQN-----MMPVDKFVLLVLESARIEVSVLLNELAYLKYESSKNSQRDDAISQKER
Q7RYX2_NEUCR/18-610                 DPSGKGTSKANSPSDDNKPFSYLLISILLIDIRSTAPTLLSQ--------LNSPSYPQSSR
Q8VZF7_ARATH/7-560                  VKLPNVD-------IPADRCLLLVLESSHVEISVLLNDLAYKKYEAPKDNSTAEDILLKQR
YCG2_SCHPO/60-540                   D-----------------GFMILVIGRCSAEIRGSLGMLVKAV-------GQKGKHGTVSY


NCDN_CHICK/4-610                    VVTACYVLIEMGIQECLK---EEESLLD-----EAQRMQLMRIMEEAFGAVVFYLRQVKE-
NCDN_DROME/2-631                    LLTCCFSILEHCIEYMAT----DQLDLE-----PKEKQTTYTALKGAFNQVLAVLTRVSQ-
NCDN_RAT/30-637                     VVTACYALMELGIQECTR---CEQSLLK-----EPQKVQLVSIMKEAIGAVIHYLLRVGP-
NCDN_XENLA/11-627                   VITACYALVEMGILACTK--EEKHPVLG-----KEQKLQLIGVMQEACAAIIYYLQQVGW-
Q69QZ3_ORYSJ/15-573                 NLAILFSLIERIIKMISNASSGEGAVCQ--TIRESTIMKAITGLNETVGLVLDFLQDAKD-
Q7RYX2_NEUCR/18-610                 RLSSAFNIISHYLGFLLRSLD-PSSSSDSLLPDPTFLLKLRTSLSETFSLTLEFLRDRYDA
Q8VZF7_ARATH/7-560                  YLPIVFSLVEKIIKYISSAGENEGTLSD-----EAVFQKVIKILNETVGAVFEYLRDAKE-
YCG2_SCHPO/60-540                   TVCECYEVLGLLIRYLCENCDVLAQRIE-----PDKFFQLQRSLTELFSDTMDFLRDAWD-


NCDN_CHICK/4-610                    -------------------------------EELQDP-------FVFASVRILGAWMAEET
NCDN_DROME/2-631                    -------------------------------DKIRESSNPKDKKFVFAIVKVLSAWLAQET
NCDN_RAT/30-637                     -------------------------------EKQKEP-------FVFASVRILGAWLAEET
NCDN_XENLA/11-627                   -------------------------------EKQEDP-------FLLASVRLLGAWLAEET
Q69QZ3_ORYSJ/15-573                 -------------------------------HGQRKGD------DLLAAVRIVGSYLAEAP
Q7RYX2_NEUCR/18-610                 SVAGAMGLDPSARSSTAHDSASGASHLTLSWESMKDS--VEQDPLILAAIRALAIWLREDD
Q8VZF7_ARATH/7-560                  -------------------------------HGIKKGT------DLLASVRVIGSYLAETP
YCG2_SCHPO/60-540                   --------------------------------NNKNRDNLASHVTVISAVATLCLWLTEDD


NCDN_CHICK/4-610                    SS-LKQEICELLPFLVRYARKLFKEGGPAENLPQTAGLVSSDSSILGQ----DALRFLLPG
NCDN_DROME/2-631                    TA-MRPAIYKLLPFMLKVANESFQELKTWRAGTREGEP------------PIDVLRIMLPA
NCDN_RAT/30-637                     SS-LRKEVCQLLPFLVRYAKTLYEEAEEASDISQQVANLAISPTTPGPAWPGDALRLLLPG
NCDN_XENLA/11-627                   AC-LKLEVIQLLPFLVHYMRTCHQRSVICSKLPKEVSQVALLSNSWGNIWPGDAIRFLLPA
Q69QZ3_ORYSJ/15-573                 YA-CKEKIRHLLEFIFSVEGQDESS-------------------------SFHSICFMLPM
Q7RYX2_NEUCR/18-610                 NEQLRKEASGLGDLFIDLYRHSCHPPDPTKGD------------------RLDFRRPVLMA
Q8VZF7_ARATH/7-560                  VA-CKEQVQDLLDYMLSVKGEDESS-------------------------PFLSTCFLLPM
YCG2_SCHPO/60-540                   SQ--YAQASGLMDIFVYLWRHSWSN-------------------------GIDYAKWISVA


NCDN_CHICK/4-610                    FCHLTAEDRPRDILISEGAPALLCDYFLHQWGV-------------LTSQ------PGSLT
NCDN_DROME/2-631                    LCHFAVEEEARRVLFTHKQDEVLLESLEFYFSIAHWKRPPIPRAERLKRMNEPDPVPTPEQ
NCDN_RAT/30-637                     WCHLTVEDGPREILIKEGAPSLLCKYFLQQWEL-------------TSPGHDTSVLPD---
NCDN_XENLA/11-627                   LCHLSAEEVPRKVLISEGVPALLCDYFQLQWDV-------------LFAEDEPEGLQS---
Q69QZ3_ORYSJ/15-573                 LSQITMEADGCRILASFGGYKMVID------CL-------------IKMIEQ---------
Q7RYX2_NEUCR/18-610                 WEGLVEERKGVESFLANGGWQALAD------DL-------------VGILQSTTTSTSSSS
Q8VZF7_ARATH/7-560                  LCQITMNAEGCKLLAYSRGDVAVVE------CL-------------IKLIER---------
YCG2_SCHPO/60-540                   LPSMLSNKVFFKAFKDFDAWKVVYD------DF-------------IKCNDDLKGDKSFND


NCDN_CHICK/4-610                    STEM-----SLQTLCGIFLNLVVTAPNL-IRQEKTFSSLMDTLLKSLPFLLPQKDHLVLAA
NCDN_DROME/2-631                    QAEMKVARSAIVALCNILMNFTVLEPKK-AEDGPTFANLLKFVVENLPELKDTPDNLVIHG
NCDN_RAT/30-637                     SVEI-----GLQTCCHIFLNLVVTAPGL-IKRDACFTSLMNTLMTSLPSLVQQQGRLLLAA
NCDN_XENLA/11-627                   AAEL-----SLQTCCGVFLNLVVTEPTF-VGQESCFVSLMKLLMQSLPTLLTKEGHLVLVA
Q69QZ3_ORYSJ/15-573                 NGMMIDTG-NMFLACDTIINFLSNMKNAHIQMGSCFVGLLKALVS----------------
Q7RYX2_NEUCR/18-610                 SASL---------------SSSGEVVVVDEAEAARGTEIVRVLLQ----------------
Q8VZF7_ARATH/7-560                  CGESVDEDRSIFLACDTIMNILLKREEISPPEISTFASLLKALAY----------------
YCG2_SCHPO/60-540                   YI------------------LSTNEEDGEDERLAQAIQDFHILIQ----------------


NCDN_CHICK/4-610                    NIATLGLVMARILSSSAVLQKTGSAKEFFRATICFLSQAHTAQADPGSHGLALAVSPAYVS
NCDN_DROME/2-631                    NLAVLGLLLLKQQSKK-VKQNDFSICRYIQATIRFLWDAY--NIDESNDPTALVVSIAYKG
NCDN_RAT/30-637                     NVATLGLLMARLLSTSPALQGTPASRGFFAAAILFLSQSHVARATPGSDQAVLALSPDYEG
NCDN_XENLA/11-627                   NFSTLGLMMSRLLAENSVLHES-NAEEFFKAAIHFLSHSHVPSCQTDAGKPVITLSESYSE
Q69QZ3_ORYSJ/15-573                 ------------------------------------------WTGTADDSSVIITASCLCT
Q7RYX2_NEUCR/18-610                 --------------------------------------------------VAELERPGPKE
Q8VZF7_ARATH/7-560                  ------------------------------------------WADGSNDHSVVMMAASICS
YCG2_SCHPO/60-540                   -----------------------------------------------------LNSLVPQS


NCDN_CHICK/4-610                    AWDDI---RELW
NCDN_DROME/2-631                    YWSDL---SELW
NCDN_RAT/30-637                     IWADL---QELW
NCDN_XENLA/11-627                   AWEEI---SELW
Q69QZ3_ORYSJ/15-573                 LVLDL---TTEE
Q7RYX2_NEUCR/18-610                 EWLDLVTKVAAW
Q8VZF7_ARATH/7-560                  LIFDF---TSED
YCG2_SCHPO/60-540                   IWNDDIWQEPYW