The sequences which have been used as reference for the generation of profiles for the family MSA-2c are highlighted in red. The profiles and the reference sequences for this family are given in a tar zipped format (Profiles are in ASN.1 format).

Download the tar zipped file.
Click here for help on generation of RPS-BLAST databases from the files given in above link

A6YQR5_BABBO/69-255                 VGMEATSATKTHDALKAVKQLIKTDAPFNTSDFDTLDLDYLSGQSNEELLKLLIEAIYGME
A6YRI2_BABBO/1-190                  VNMPSDCSRDALKALKDILVVLKEEIPFETSLFDNEVLKEFEYQDTDQIFKSLLERVLLIK
Q3LUQ2_BABBO/63-250                 VDMPSDCSRDALKALKDILVVLKEEIPFETSLFDNEVLRELEIQDQDQIFKSLLERVPLIK
Q3LUQ4_BABBO/63-264                 AKMAGEGSLKALSAFVENLDVLKEEVPFETSLFDAALLKDLEIQDPDDVFKSLLERVPLIK
Q3LUR0_BABBO/63-260                 VNMPSDISLDALSAFVEILDVFGKGVPFETSLFDDYELGNLEYQDPDQVFKYLLQGVTLIK
Q3LUR3_BABBO/63-274                 VDMPSENSLDALSAFVQILDFFKDKVPFKTSLFDEDVLRNLDLQELDSIFNSLRLRVPLIK
Q3LUR5_BABBO/63-257                 VNMPSDSSRDALNAFVEILDDLEKKVPFETTLFDKDVLGNLDLQDPDQIFKLLLLRVPLIK
Q3LUR6_BABBO/63-253                 ANMPSDSSRDALNAFVEILDNLGEEVPFETTLFDDCVLGNLNHQDPDDIFNSILVRVPLIK
Q4TWG4_BABBO/75-274                 MYLEIDKAKKGLKEMKETAVSIKDNKPFTADGF---VTAGGDVASVNGNFETLMDSVIQIY
Q4TWG8_BABBO/75-270                 MAYQVANTKDGLIKMKETAKSLKDDNQFTSDGF---VTSAEEAKKVDGDFDTLMGSVIQIY
Q4TWH0_BABBO/75-273                 VDALVRDAKNGLVRMKNVAELLKEDKQFSSEGF---ITSTEQAKSVEGDFESLMYSVIQIY
Q95UG6_BABBO/63-271                 VNLPSDSSPDALNAFVYILDFFRDKVPFKTSLFDDDLLRNLDLQELDQIFNSLRLRVPLIK
Q95UG9_BABBO/63-277                 VNMPSDCSRDALKALKDILVVLKEEIPFETSLFDKEVLRELEIQDQDQIFKSLLERVPLIK
Q95UH0_BABBO/63-282                 VDMPSDNSLDAINAFVEILDSFKEKVPFKTSLFDNSVFDNLKYQDTDEIFKSLLLRVPLIK


A6YQR5_BABBO/69-255                 IIIEKTHSFVG---ESQKYSDDVDTELRKYYKANIYDDINEY-NKDKLSNLYKVLITDSGD
A6YRI2_BABBO/1-190                  KMLSEFNAFLN--DNPPHLLTNGRDKMTKYYKKHISAKDSGVKDYTFLVKFCNDYLDSESP
Q3LUQ2_BABBO/63-250                 TMLTEFNAFLN--DNPQRLLADKNGEVTKYYKKHISAKDANVKDYKTMVKFCNDFLDSKSP
Q3LUQ4_BABBO/63-264                 SKLIAFNAFLH--DNPQRIMANQDGEMTKYYKEHISKEDVKVKDYTFLVKFCNDFLDDESP
Q3LUR0_BABBO/63-260                 TKISAFNVFLN--DNPPRMLANESGEMTDYYKKHICKEDTEVKDYNSLVKFCNDFLDSKSP
Q3LUR3_BABBO/63-274                 TKLSAFNSFLN--DNPPHMLTNGKVKMTEYYKKHISKEDAEVKDYETLVKFCNDFLDSESP
Q3LUR5_BABBO/63-257                 TKLSAFNVFLN--DNPPRMLANESGEMTDYYKKHICKEDSEVKDYNSLVKFCNDFLDSKSP
Q3LUR6_BABBO/63-253                 AMLSEFSAFLN--DNPQRMLGSGTDKITEYYKEHISKKDAKVKDYTFLVKFCNDFLDSESP
Q4TWG4_BABBO/75-274                 HKCNALNNEVDRLFPNGQETEENIKEMNKYFKNKVYNSDNV--DNKALVTIGNMFVKAEN-
Q4TWG8_BABBO/75-270                 HKCKALDEVAKRLFSGGEERKENIEEMKTYFKNNVYNKGDV--EGKALVNMGSMFLEGEN-
Q4TWH0_BABBO/75-273                 HKCVALNKEVNRLFPNAKESEESIAEMKKYFKKNIYDKDTV--SNQGLIAIGDAFVKAED-
Q95UG6_BABBO/63-271                 TKLSAFNAFLN--DNPPHMLANGRDKMTKYYKKHISAKDSDVKDYTFLVKFCNDYLDSESP
Q95UG9_BABBO/63-277                 TMLTEFNAFLN--DNPQRLLADKNGEVTKYYKKHISAKDANVKDYTFLVKFCNDYLDSESP
Q95UH0_BABBO/63-282                 KMLSEFNAFLN--DNPQRLLADKNGEVTKYYKKHISAKDANVKDYTFLVKFCNDFLDSKSP


A6YQR5_BABBO/69-255                 LRIASEELTKFE-----TRKAQKDDYRFINPSSTSEPETPSPSSGENT-------------
A6YRI2_BABBO/1-190                  FMKIYKAFNTYEEL---VKKKPSITPSPT-SSSQGTTTS-QPSQDSAAPNTSAGNLNGH--
Q3LUQ2_BABBO/63-250                 FMRLYKHLNEYDEL---VKKKPAQESSPAPSSAQ------RPAETQQTQDSAAPSTPAAPS
Q3LUQ4_BABBO/63-264                 FMKMYKALKEYDEL---VNSAPAHSPSPTHSSPQGTTTT-QPSQDSAAPNTSAESSSGNLN
Q3LUR0_BABBO/63-260                 FMRIYKAFNTYEEL---VEKMPGKPSSPTHSSSQGTTTT-RPSQDSAAPNTSA----GNLN
Q3LUR3_BABBO/63-274                 FMRIYKDLNTYEEL---VKKAPGNSSSSSPSSPQETTGTQQPQAPGISQPTSPGGQPAVPN
Q3LUR5_BABBO/63-257                 FMRIYKALNTYEEL---VEKMPGKPSSPTHSSSQGTTTT-RPAAPSPSQADQPTKPEGNLN
Q3LUR6_BABBO/63-253                 FMRIYRGLNKYEEL---VKKTPGNPSSPTHSSSQGTTTT-RPSQDSAAPNTSA----GNLN
Q4TWG4_BABBO/75-274                 --------------FDSIVRAATQFYRKKADANNRDSNLESPGDGHTSGIETGAPGSQ---
Q4TWG8_BABBO/75-270                 --------------FDSVVGTAAEYYKKKMGAGSGNSNM-APSDNSSTGGSGPAPSGSNP-
Q4TWH0_BABBO/75-273                 --------------FDSIVRTAAEYYKKKQAPGGGHSPEARPSEGPAGPSATQPRTPESP-
Q95UG6_BABBO/63-271                 FMKIYKAFNTYEEL---VKKSPSITPSPI-PSTQGTPGA-QP----AAPNTSQPDTPAAQS
Q95UG9_BABBO/63-277                 FMKMYKAFNTYEEL---LKKMPSKTPSPT-SSPQATPGA-KPAAPNTSE--SAGGQPQQET
Q95UH0_BABBO/63-282                 FMRLYKHLNEYDEL---VKKKPAQESSPAPSSPQ------RPAETQQTQDSTAPGTPAAPS


A6YQR5_BABBO/69-255                 -----------AAQPPKPAETPKPT-------------GSSFTFGGLTVA
A6YRI2_BABBO/1-190                  ---------------GKPA-------------------GSSFTFGGLTVA
Q3LUQ2_BABBO/63-250                 P-------------PQRPAETQQTQD---------------------STA
Q3LUQ4_BABBO/63-264                 G------------QPSKSAETPKPT-------------GSSFTFGGLTVA
Q3LUR0_BABBO/63-260                 G------------QPSKPAETPKPT-------------GSSFTFGGLTVA
Q3LUR3_BABBO/63-274                 P--------SHADHPTKPEQSTS-------NLNG-PSKSASFTFGGLTVA
Q3LUR5_BABBO/63-257                 G-------------QNEPAKS-------------------SFSYGELTVA
Q3LUR6_BABBO/63-253                 G-------------QNEPAKS-------------------SFTFGGLTVA
Q4TWG4_BABBO/75-274                 ----------PAGQQEPEARSPSGNLQKPDGSNPSKPAGSSFTCGGLTVA
Q4TWG8_BABBO/75-270                 ------------TERESEARSPSGNLQKPETP---KPTGSSFTFGGLTVA
Q4TWH0_BABBO/75-273                 ------SPQGPPAESSSQAEQPAGNLNGPSKP-------ASFTFGGLTVA
Q95UG6_BABBO/63-271                 HPGPAAPSTTSADQPPKPAETPKPT-------------GSSFTFGGLTVA
Q95UG9_BABBO/63-277                 P----ENRPSQAPSPQSPPQTEQSTS----NLNG-PSKSASFTFGGLTVA
Q95UH0_BABBO/63-282                 PQGPTAESPSQADHPTKPTQTPEGNLQGQQGTT--KPAGSSFTYGGLTVA