The sequences which have been used as reference for the generation of profiles for the family FXR1P_C are highlighted in red. The profiles and the reference sequences for this family are given in a tar zipped format (Profiles are in ASN.1 format).

Download the tar zipped file.
Click here for help on generation of RPS-BLAST databases from the files given in above link

FMR1A_XENLA/361-509                 VDQLRLERLQIDEQLRHIGASSRPPPNRP------DKEKGYLSEDC----SGTVRGSR---
FXR1_BOVIN/361-486                  VEQLRMERLQIDEQLRQI-------------------------------------GSR---
Q4T116_TETNG/385-534                MEQLYMERLQIDDQLRQIGVGYRAPSSRG---PGGDRERGYLTDDS----NNSLHTTR---
Q4T723_TETNG/410-571                VEQLRLERLQIDEQLRQLTQGHRPAERER---EERGEREGYHTDGSANAASSSLHVSR---
Q6AXB7_MOUSE/426-576                VDQLRLERLQIDEQLRQIGASSRPPPNRT------DKEKGYVTDDG----QGMGRGSR---
Q6P5B5_MOUSE/371-530                VEQLRLERLQIDEQLRQIGLGFRPPGSGRGGSGGGSDKAGYTTDES---SSSSLHTTRTYG
Q7SYM7_DANRE/362-436                VDQLRMERLQIDEQLRQIGGGPRALPGRP------EKEKSFMADNG---------------
Q7ZV52_DANRE/377-526                VEQLRLERLQIDEQLRQIGVGYRAPPSRSGSGVAGERERGYLTDES----TNSLQTTR---
Q9PUN3_DANRE/360-509                VEQLRLERLQIDEQLRQIGMGFRSVPNRP-----ADKEKGFGPDES---SSGSIHTQR---


FMR1A_XENLA/361-509                 -PYSNRGRSRRGTGYAS---GTNSEASNASETESDHRDELSDWSLAPAEDD--RDNYHRRG
FXR1_BOVIN/361-486                  -SYSGRGRGRRGPNYTS-GYGTNSELSNPSETESERKDELSDWSLAGED-D--RESRHQRD
Q4T116_TETNG/385-534                -NYAPRGRGHRGANNQHSGFVTNSEMSNTSEPEDANEREQRPRGTSGDE------------
Q4T723_TETNG/410-571                -TYNGRGRGRRGHHAGY---GTNLDPANASETDSERRDELSDWSLAGEDQDGEREPRPQRD
Q6AXB7_MOUSE/426-576                -PYRNRGHGRRGPGYTS---GTNSEASNASETESDHRDELSDWSLAPTEEE--RESFLRRG
Q6P5B5_MOUSE/371-530                GSYGGRGRGRRTGGPAY---GPSSDPSTASETESEKREE-SNRAGPG---D--RDPPSRGE
Q7SYM7_DANRE/362-436                -------------------------------------------------------------
Q7ZV52_DANRE/377-526                -TYGGRGRGRKPNNTYS-GYGTNSEMSNASETEDLGDRESRPKGVGADD------------
Q9PUN3_DANRE/360-509                -SY--RGRGRRGPAHTS-AYGTNSEHSYTSETDSERKAELSDWSLAADESE--RNPRPQRD


FMR1A_XENLA/361-509                 -DGRRR--GGTRGQ-GMRGR-GGFKGNDDQ--PRPDNRQRNSRETKARTSDGS
FXR1_BOVIN/361-486                  -SRRRP-GGRGRSVSGGRGR-GGPRGGKSSISSVLKDPDSNPY-SLLDNTESD
Q4T116_TETNG/385-534                -RGARR-GARGRGANTGRGRGGPGSKPSNSISSVLRDPDSNPYSVLEGKGELP
Q4T723_TETNG/410-571                -ARRRP--GPGRGRGAGRGGRGRGRGYSNSFAGPRSSEDNRAYVSLETNTETD
Q6AXB7_MOUSE/426-576                -DGRRR-GGGGRGQ-GGRGRGGGFKGNDDH--SRTDNRPRNPREAKGRTADGS
Q6P5B5_MOUSE/371-530                ESRRRPIGGRGRGP-PPVPR-PTSRYNSSSISSVLKDPDSNPY-SLLDTSEPE
Q7SYM7_DANRE/362-436                ---------------MGPSRGGGYKTEDMHWN---DSRSRSSRDSKLRPQEES
Q7ZV52_DANRE/377-526                -RGSKR-GGRGRGSSAGRGRGGPGPRNINTISSVLRDPDSNPY-SLLE-GEGE
Q9PUN3_DANRE/360-509                -SRRRDMRGRGR---GSRGR---GSGASNSISSVLKDPDGNPY-SLLDNTETD