The sequences which have been used as reference for the generation of profiles for the family Epiglycanin_C are highlighted in red. The profiles and the reference sequences for this family are given in a tar zipped format (Profiles are in ASN.1 format).

Download the tar zipped file.
Click here for help on generation of RPS-BLAST databases from the files given in above link

C9JUN3_HUMAN/461-566                SASTAVSEAKPGGSLVPWEIFLITLVSVVAAVGLFAGLFFCV-RN-SLSLRNTFNTAVYHP
D9N008_MOUSE/1517-1608              HTGTPVMEVKPSGSLKPWEIFLITLASVIVVMGLSAGLFIYVXRR-YLSLRNAADGIFYNS
F1PGG5_CANFA/321-424                SATTPVNEETPSGSLKPWEIFLITLVSVVVAVGFFAGLFFCV-RN-SLSLRNVFDTAVYCP
F1RU66_PIG/451-554                  SASTPVSEAKPSGSLKPWEIFLITLVSVVVAVGFFVGIFFCV-RK-SLSPRNDFNTAVYHP
MUC22_HUMAN/1644-1773               MSHTPTNVIKPSGYLQPWAIILISLAAVVAAVGLSVGLSFCL-RNLFFPLRYC---GIYYP


C9JUN3_HUMAN/461-566                HGLNHGLGP--------------------------GPGGNHGAPHRPRWSPNWFWRRPVSS
D9N008_MOUSE/1517-1608              H-------P--------------------------DPGGSAMTPGSLTCS----WRRPRTF
F1PGG5_CANFA/321-424                HGPN--LGS--------------------------SPGGNHGVHHRPSWSPNWFWRRPVSS
F1RU66_PIG/451-554                  HGPN--LGL--------------------------GPGGNHGVHHSSGWSPNWFWRGPTSS
MUC22_HUMAN/1644-1773               HGHSHSLGLDLNLGLGSGTFHSLGNALVHGGELEMGHGGTHGFGYGVGHGLSHIHGDGYGV


C9JUN3_HUMAN/461-566                IAMEMSGRNSGP
D9N008_MOUSE/1517-1608              NVVEM----TRI
F1PGG5_CANFA/321-424                IAMEMSRGYNRP
F1RU66_PIG/451-554                  VAMEMRGGYNRP
MUC22_HUMAN/1644-1773               NHGGHYGHGGGH