The sequences which have been used as reference for the generation of profiles for the family 5_3_exonuc are highlighted in red. The profiles and the reference sequences for this family are given in a tar zipped format (Profiles are in ASN.1 format).
Download the tar zipped file.
Click here for help on generation of RPS-BLAST databases from the files given in above link
DPO1F_THETH/173-270 LRPEQ----WVDYRALAGDPSDNIPGVKGIGEKTAQRLIREWGSLENLFQ--HLDQVKP-S
DPO1_ANATD/171-270 VWANQ----VPDYKALVGDQSDNIPGVKGIGEKSAQKLLEEYSSLEEIYQ--NLDKIKS-S
DPO1_BACSU/173-273 LTPEQ----IIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFDSVEKLLE--SIDEVSGKK
DPO1_BORBU/170-267 VNSFQ----IKDYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYS--NLEIINK-K
DPO1_CHLAA/176-275 LEPDQ----LADLRGLKGDTSDNIPGVRGIGEKGAIALLKQFRSLDALLE--QIDAAPK-R
DPO1_DEIRA/209-309 VTVRQ----WVDYRALTGDASDNIPGAKGIGPKTAAKLLQEYGTLEKVYEAAHAGTLKPDG
DPO1_ECOLI/171-277 VPPEL----IIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYA--EPEKIAGLS
DPO1_GEOSE/171-271 LTPEQ----IVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLA--SIDEIKGEK
DPO1_HAEIN/171-277 IPPEL----IIDYLALMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYA--NLEKVAELP
DPO1_HELPY/172-275 ILPSQ----FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYE--NLDLAKNLL
DPO1_LACLM/179-279 LTPSQ----FIDLKALMGDSSDNYPGVTKVGEKTGLKLLQEFGSLENLYE--NVETLKASK
DPO1_MYCTU/185-284 LTPRQ----YPDFAALRGDPSDNLPGIPGVGEKTAAKWIAEYGSLRSLVD--NVDAVRG-K
DPO1_RICPR/169-269 TTPDK----LREVMALIGDRSDNIPGVPSIGPKTASSLITKFGSVENIFN--SLDQISSIK
DPO1_STRR6/176-276 LTPAQ----FIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYE--NIDGMKTSK
DPO1_SYNY3/187-286 VTPAQ----IVDFKALCGDKSDCIPGINGIGEKTAIKLLAEYETLEKVYE--NLAQIKG-A
DPO1_THEFI/173-273 VPPER----WVDFRALTGDRSDNIPGVAGIGEKTALRLLAEWGSVENLLK--NLDRVKPDS
DPO1_TREPA/174-273 VMPTQ----LLDLFSLMGDSSDNVPGVRGIGPKTAAHLLHCFGTLDGIYR--HTYSLKE-A
EX53_AQUAE/166-262 VEPQK----IPDYLALVGDKVDNVPGIEGVGPKTAINILKKYGSVENILK--NWEKFQR--
EX53_BACSU/175-273 VMPKA----LIDIKALMGDSSDNYPGVKGIGEKTAYKLIREYETIDRLLE--NLSLLPK-G
EX53_MYCGE/175-274 LAPYQ----VVEYKGLVGDNSDNLAGIKGIGPIKGIELLQQYGTIDNIYT--NFNNLPN-Q
EX53_MYCPN/175-274 LTPKQ----VIEYKGLVGDNSDNLTGIKGIGPKKGIDLLKQYGTIDNIFA--NFDKLSK-A
EX53_MYCTU/186-295 LPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMA--AADDRKTTM
O68765_YERPE/189-305 LPTPR---AFLEAKALQGDTSDNIKGVGGIGDGGAKELLHEWGSVAAMVRGINDGSIVINK
O84500_CHLTR/167-268 VPPEQ----IADYLALVGDSSDNIPGVSGCGPKKAQALLKEFQSVEELVA--NTERLSG-K
O96139_PLAF7/456-555 ILPSQ----YSDYLILTGDKTDGISGVPYIGDKTSKCLLKEYHNIENILK--NLHKLPS-K
Q9Z7U2_CHLPN/168-269 IPPGN----IPDYLALVGDSSDNIPGLPGCGPKKAAALLKQFGSVEGLLE--NLDAVKG-L
Q9ZIG3_RHOSI/174-274 LEPHQ----FIDVLALMGDPSDNVPGVPGIGEKTAVQLIQQYGSVENLLA--HAEEVKGKR
DPO1F_THETH/173-270 LR------EKLQAGMEALALSRKLSQVHTDLPLEVDFG---------RRRTPNLEGLRA
DPO1_ANATD/171-270 IR------EKLEAGKDMAFLSKRLATIVCDLPLNVKLEDL-------RTKEWNKERLYE
DPO1_BACSU/173-273 LK------EKLEEFKDQALMSKELATIMTDAPIEVSVSGL-------EYQGFNREQVIA
DPO1_BORBU/170-267 HR------ELLIKEKENAFLSYELVSLEENLKIPEIEN---------FALKNFSEEIIS
DPO1_CHLAA/176-275 YQ------TLLREQAEAARFSRQLATIVTDVPVQLDLEAA-------RIGVYDRSAVMA
DPO1_DEIRA/209-309 TR------KKLLDSEENVKFSHDLSCMVTDLPLDIEFG---------VRRLPDNPLVTE
DPO1_ECOLI/171-277 FRGAKTMAAKLEQNKEVAYLSYQLATIKTDVELELTCEQL-------EVQQPAAEELLG
DPO1_GEOSE/171-271 LK------ENLRQYRDLALLSKQLAAICRDAPVELTLDDI-------VYKGEDREKVVA
DPO1_HAEIN/171-277 IRGAKKLGEKLLAEKNNADLSYTLATIKTDVELNVTTDQL-------LLGESQKDQLIE
DPO1_HELPY/172-275 SPK---MYRALIHDKASAFLSKELATLERGCIKEFDFLSC-------AFPSENPLLKIK
DPO1_LACLM/179-279 MK------DNLIADKEMAFLSQQLATINTKAPLEIGLEDT-------LLKEKNVAELGQ
DPO1_MYCTU/185-284 VG------DALRANLASVVRNRELTDLVRDVPLAQTPDTL-------RLQPWDRDHIHR
DPO1_RICPR/169-269 QR------KTLQNAREAALISWKLIGLDSNVDLDFDLNNL-------KWSPPNSKKLTG
DPO1_STRR6/176-276 MK------ENLINDKEQAFLSKTLATIDTKAPIAIGLEDL-------VYSGPDVENLGK
DPO1_SYNY3/187-286 LK------TRLDNGKDDAMHSQMLARIVVDVPLPVTWEDL-------QLTGFSTDRLVP
DPO1_THEFI/173-273 LR------RKIEAHLEDLHLSLDLARIRTDLPLEVDFKAL-------RRRTPDLEGLRA
DPO1_TREPA/174-273 LR------TKIVCGKKDAFFSRSLIELRDDVPCVFSLEDS-------CCIPLDVTSAAR
EX53_AQUAE/166-262 --------EFPRAKKEDLELSYKLVKLYTDLDIELSEEDL-------KIKRPDLNKLKQ
EX53_BACSU/175-273 QQ------GKIQQGLSDLEMSRKLAEIHCSVPLACTLKD--------ALFTLQMEQAAD
EX53_MYCGE/175-274 LQ------KLLNNQKEIAKTFSFLAKIKTDIELDQNIDLT-------GLKPIQKQALIQ
EX53_MYCPN/175-274 LQ------TILQGQIDTAKKFSFLASIKTDIKLNDDIVHA-------ALKPIDKQALLE
EX53_MYCTU/186-295 AKG---LRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDR-----FPLVAADPERTAE
O68765_YERPE/189-305 GRYKTAFNKLAKNAFNEKTGCRMLEAFKRNMMLMNLIDTKFPPSEIESIKGARDMNAFE
O84500_CHLTR/167-268 TK------QMIEDQKETLLLSKRLATLHMDLAFPLTTEEFA-----FSPQAIDSAQLNT
O96139_PLAF7/456-555 LH------HIFLNNIENINTFRKLIKLKCETNESLVFDDY-------KQKRIKNFEQFR
Q9Z7U2_CHLPN/168-269 SQ------TMLSERQETLKLSKRLALLDSNIPIPVPIESLT-----FPQHPVDEEKLIH
Q9ZIG3_RHOSI/174-274 AR------EGLLNHREEALLSKRLVTIRTDVPLRIRWEAF-------HRARPDLPRLLQ