The sequences which have been used as reference for the generation of profiles for the family 4_1_CTD are highlighted in red. The profiles and the reference sequences for this family are given in a tar zipped format (Profiles are in ASN.1 format).

Download the tar zipped file.
Click here for help on generation of RPS-BLAST databases from the files given in above link

41_BOVIN/500-614                    KSEIPTKDVPIVHTETKTITYEAAQTDDSNGDLDPGVLLTAQTITSETTSSTTTTQIT---
E41L1_HUMAN/777-869                 ATEIRSLSPII----------------------GKDVLTSTYGATAETLSTSTTTHVT---
Q4RWU7_TETNG/1011-1124              ATDAGTKEMPVIHTETKTITYESAEV-DTNGDFDPGVLLSAQTITSETTSTTTTTHIT---
Q4SC32_TETNG/853-990                KTEIATKEVPIVHTETKTITYEAAQL-DGNGDSEPGVLMTAQTITSESLCTTTTTHIT---
Q4SJY1_TETNG/1090-1197              DQNISSEGHISDLIADAGFCSQVHVGSLGRESAGSPILVAEN-------VTSATTHVT---
Q4SR26_TETNG/656-765                GLCIRCVLLCVYVTSPLTIGLQV-----KTNIQEKDPVTSLLTITAENVTSATTTQVT---
Q59FD8_HUMAN/562-670                MDQSLMKDFPGAAGEISAYGPGLVSI----------AVVQDGDGRREVRSPTKAPHLQLIE
Q7TPN6_MOUSE/178-291                RTEISTKEVPIVQTETKTITYESPQI-DGGAGGDSGVLLTAQTITSESASTTTTTHIT---
Q9GMU0_MACFA/8-120                  LEEKNSLRVEGDNIYVRH-SNLMLEI-DGGAGGDSGTLLTAQTITSESVSTTTTTHIT---


41_BOVIN/500-614                    -K------------------------TVKGGISETRIEKRIVITGDADIDHDQVLVQAIKE
E41L1_HUMAN/777-869                 -K------------------------TVKGGFSETRIEKRIIITGDEDVDQDQALALAIKE
Q4RWU7_TETNG/1011-1124              -K------------------------TVKGGISETRIEKRIVISGDADIDHDQALAQAIKE
Q4SC32_TETNG/853-990                -KVEPAADTHFPWFLPRPPSLVACPQTLKGGLSETRIEKRIVITGDCDIDHDEALAQAIKE
Q4SJY1_TETNG/1090-1197              -K------------------------TVKGGYSETRIEKRIIITGDDDVDQEQALAIAIQE
Q4SR26_TETNG/656-765                -K------------------------TVKGGYSETRIEKRIIITGDDDVDQHQALAMAIQE
Q59FD8_HUMAN/562-670                GK------------------------TVKGGISETRIEKRIVITGDGDIDHDQALAQAIRE
Q7TPN6_MOUSE/178-291                -K------------------------TVKGGISETRIEKRIVITGDAALDHDQALAQAIRE
Q9GMU0_MACFA/8-120                  -K------------------------TVKGGISETRIEKRIVITGDADIDHDQALAQAIRE


41_BOVIN/500-614                    AKEQHPDMSVTKVVVHQETEI
E41L1_HUMAN/777-869                 AKLQHPDMLVTKAVVYRETDP
Q4RWU7_TETNG/1011-1124              AKEQHPDMSVTKVVVHKETEI
Q4SC32_TETNG/853-990                AKEQHPDMSVTRVVVHKETEL
Q4SJY1_TETNG/1090-1197              AKQQHPDMQVTKAVVVRETES
Q4SR26_TETNG/656-765                AKQQHPDMLVTKAVVIRESES
Q59FD8_HUMAN/562-670                AREQHPDMSVTRVVVHKETEL
Q7TPN6_MOUSE/178-291                AREQHPDMSVTRVVVHKETEL
Q9GMU0_MACFA/8-120                  AREQHPDMSVTRVVVHKETEL