The sequences which have been used as reference for the generation of profiles for the family 3HCDH are highlighted in red. The profiles and the reference sequences for this family are given in a tar zipped format (Profiles are in ASN.1 format).
Download the tar zipped file.
Click here for help on generation of RPS-BLAST databases from the files given in above link
AIM1_ARATH/492-585 GFAVNRTFFPYSQAAHMLANLG-VDLFRIDSVITS-FGLP-LGPFQLGDLAGHGIGLAVG-
CRYL1_RABIT/192-283 GFVLNRLQYAIISEAWRLVEEGIVSPSDLDLVMSDGLGMR-YAFIGPLETMHLNAEGMLS-
ECHA_HUMAN/544-639 GFYTTRCLAPMMSEVIRILQEG-VDPKKLDSLTTS-FGFP-VGAATLVDEVGVDVAKHVAE
ECHP_CAVPO/481-585 GFVGNRMLRSYYEQTNFLLEDG-SKPEDIDQALEE-FGFR-MGPFRVSDLAGLDVGWKIRK
ECHP_HUMAN/478-582 GFVGNRMLNPYYNQAYFLLEEG-SKPEEVDQVLEE-FGFK-MGPFRVSDLAGLDVGWKSRK
FAD3_RICPR/193-295 GFIANRVGCFLLELVVHKAIAQNLNFVTIDQIFSRCLGLPNTGIFGLYDLIGHDVMKLIS-
FADB2_MYCTU/190-286 GFVVNALLVPYLLSAIRMVEAGFATVEDVDKAVVAGLSHP-MGPLRLSDLVGLDTLKLIAD
FADB_ECOLI/496-592 GFFVNRVLFPYFAGFSQLLRDG-ADFRKIDKVMEKQFGWP-MGPAYLLDVVGIDTAHHAQA
FADB_PSEFR/497-592 GFLVNRVLFPYFGGFAKLVSAG-VDFVRIDKVMEK-FGWP-MGPAYLMDVVGIDTGHHGRD
FADJ_ECOLI/492-586 GFYVNRILAPYINEAIRMLTQG-ERVEHIDAALVK-FGFP-VGPIQLLDEVGIDTGTKII-
FADJ_VIBCH/497-590 GFYVNRILAPYMNEAAQVLMAG-EPIEKLDAALLD-FGFP-VGPITLLDEVGVDIGAKIM-
HBD_BACSU/186-282 GFVSNRVLLPMINEAIYCVYEGVAKPEAIDEVMKLGMNHP-MGPLALADFIGLDTCLSIME
HBD_CLOAB/184-280 GFVVNRILIPMINEAVGILAEGIASVEDIDKAMKLGANHP-MGPLELGDFIGLDICLAIMD
HBD_CLODI/183-279 GFVVNRILIPMINEAVGIYADGVASKEEIDEAMKLGANHP-MGPLALGDLIGLDVVLAIMN
HBD_THETC/184-280 GFVVNRILIPMINEAIGILADGVATAEDIDEAMKLGANHP-IGPLALSDLIGNDVVLAIMN
HCDH1_CAEEL/199-296 GFIVNRLLIPYFFEAARMYERGDASMTDIDEAMKLGAGHP-MGPFELADYIGLDTVKFVMD
HCDH2_CAEEL/211-308 GFIVNRLLVPYMFEALRLYERGDASMEDIDVAMKLGAGYP-MGPFELSDYVGLDTCKFIMD
HCDH_HUMAN/216-313 GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYP-MGPFELLDYVGLDTTKFIVD
LCDH_PSEAE/188-280 GFIADRLLEALWREALHLVNDGVATTGEIDDAIRFGAGLR-WSFMGTFLTYTLAGGNAGMR
MFPA_CUCSA/495-588 GFAVNRMFFPYSQAAILLAEHG-VDPYQIDRAISK-FGMP-MGPFRLCDLVGFGVAAATAS
O17612_CAEEL/535-630 GFFVVRCLSPMMSEIVRLLQEG-VEPSELDKLTTK-FGFP-VGAATLADEAGLDVAEHVAR
O28011_ARCFU/200-294 GFIVNRVQAPASVLLMAILEKGIATPEEVDATVRR-LGLP-MGPFELVDYTGVDILYNALK
O29062_ARCFU/188-281 GMVANRLAAALWREAVNLVYQGIATPEEIDVAVKYGPGIR-WAITGVYLTYHLGGGQGGMK
O29077_ARCFU/192-288 GFFTTRFINSWLVEAVRLFEIGIAGIKEIDEMCKLAFGFP-MGPFELMDLIGLDTALHIAE
O29090_ARCFU/181-277 GHVLNRMLAAAGVAVGYCLL-Y-SRPEEIDAALRN-LGMR-YGFFETIDLIGLDVAKDVLE
O29143_ARCFU/183-276 GFLINRINIRVFVEAIRLLEEG-FKPEQIDAAVKYRAGLP-MGLFEVVDFSGVDTVYNVLN
O29237_ARCFU/186-280 GFIANRVVAPRGVLLHAVVEAENLTPEEVDAAFRK-AGYP-MGPFELADYVGIDVNYNAAR
O29815_ARCFU/186-282 GFATSRLGLVLGKEALLMVQEGVATPQDIDIGMMLGYGYS-MGPIETGDLVGLDTRLRIYE
O29956_ARCFU/188-278 GFIVNRILVPYLVLAIDDVEKGVATKEEIDATMMYKYGFP-MGPIELSDFVGLDILYHAS-
O30218_ARCFU/190-288 GFIVNRIFVTMSNEASWAVEMGEGTIEEIDSAVKYRLGLP-MGLFELHDVLGGGSVDVSYH
O44608_CAEEL/202-299 GFIVNRLLIPYLMDSIRMLERGDATKEDIDTAMRFGTSYP-MGPIELCDYVGLDVLQSTLK
O53872_MYCTU/508-607 GFFTSRVIGTFVNEALAMLGEG-VEPASIEQAGSQ-AGYP-APPLQLSDELNLELMHKIAV
O57660_CHICK/551-646 GFYTTRCLGPMLAEVGRVLQEG-IDPKKVDAISTA-FGFP-VGAATLIDEVGVDVATHVAE
O84980_PSEPU/190-287 GFIVNRVARPFYAESLRLLQEGAADCASLDALLRDAGGFR-MGAFELTDLIGHDVNYAVTC
O88051_STRCO/206-302 GFVVNALLIPYLLSAIRMFESGIASREDIDNGMEMGCAHP-MGPLKLADLIGLDTVASVA-
PAAH_ECOLI/188-285 GFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFP-MGPLELTDLIGQDVNFAVTC
Q53926_STRCH/176-278 GFAANRLQSALLRESIHLVLEGVVTVEELDRIVTDSIGLR-WSTIGPFHAFHLGGGPGGLR
Q978T2_THEVO/186-280 GFVVNRINAPESLYFCLVLDKGIAKPEEVDRFARS-QGLP-MGPYELMDYVGIDTVYHSLE
Q979P5_THEVO/219-314 GFIVNRLLIPFINEASKMLDYGIATEKDIDIAMKKGAGFP-MGPFELADMIGIDVVKDVMN
Q97AH0_THEVO/189-285 GFYTTRFIEGWLLSAIRSAEQGVATRKDIDAMTKMAFGFP-MGPFELMDIIGIDTVYHIAT
Q97UK9_SULSO/186-281 GFVSNRIFLRLMQEACREVEDGEATIEEVDSAARNGLKLP-MGIFELSDYVGIDVAVDLWN
Q97UX0_SULSO/186-280 GFVVNRILLRIITTACMLVEKGICEYTAIDAVARYKLGFP-MGIFELVDYTGVDVNYYVSS
Q97VU5_SULSO/190-286 GYVVNRILGQINIASCILVEKKVADYREVDAVARYKLGFP-MGVFELIDYTGVDVAYYVSK
Q988C8_RHILO/184-282 GFVENRVLYALLREAVDLVERGVIDPEDLDTCVSWGIGYK-IAVIGPMALLDMAGLDIYKS
Q98BD2_RHILO/509-606 GFYVNRCVLRYMSEAYKMLIEG-VPAPMIENAAKA-AGMP-VGPLALTDETAIDLAQKIMK
Q98EK7_RHILO/475-561 GFVGNRMLAARGSESEALLLEG-ATPSQIDKAFTD-FGWP-MGPFQMGDLAGLDIGWRNR-
Q98LG2_RHILO/186-278 GFIMNRLQGALLEEAFRLVADGYASVEDVDIGIRDGLALR-WSFMGPFETIDLNAPGGVRD
Q99WZ1_STAAM/189-287 GFVANRVGTQTMNDIMYRAEQHKLSIVDVDALTGQAIGRPKTGTYALSDLVGLDIAVSVIK
Q9A3L4_CAUCR/483-581 GFVGNRMLAQRQREAQKLILEG-AMPWDVDRVLYD-FGLP-MGPFAMSDLAGLDIGWDPAK
Q9ABZ4_CAUCR/482-579 GFYTSRCFGTFVQEGLEMLADG-IAPAIIDNVGRA-TGMP-RGPLEMNDDVALDLGYKVTQ
Q9ADL9_SORCE/196-292 GFVSNRVLMLTINEAIFLVQDQVASAADVDRIFKGCFEHK-MGPLETADLIGLDTILYSIE
Q9F9V1_AZOEV/190-287 GFIVNRVARPYYAEALRVLAEHEAEPATLDAILREGCGFA-MGPFELMDLIGHDVNFAVTK
Q9HJM0_THEAC/219-314 GFIVNRLLIPLINSASDLLDSGVASAEDIDTAMKKGAGFP-MGPLELADMIGIDVVVDVME
Q9HQ61_HALSA/191-286 GFVVNRILVPLLNEAAWLVHDDEATIAEVDSTTKYDMGLP-MGAFELADQVGIDVSHDVLD
Q9HRI4_HALSA/190-285 GFVTNRILMPWINEGVRAFDEGVASKDDIDTGMKLGTNVP-MGPLELADHIGLDVCLDASE
Q9HU01_PSEAE/190-281 GFIGNRMLEPYATEARLMLLEG-ALPYQVDRALQA-FGFA-MGPFRMYDVVGIDLEWRARE
Q9HY36_PSEAE/189-286 GFIVNHAGRAFGTEALRILGEGVAPVAAIDEVLREGAGFR-MGPFELFDLVGLDVSLPVME
Q9HY36_PSEAE/415-510 GFIVQRTLASIVNLACDIAQQGIASVEHIDLAVRLGLGYP-LGPLEWGDRLGAGRVLRILE
Q9I300_PSEAE/499-599 GFFTSRVFGTFTNEGIAMLGEG-VSAAMIDNQARQ-AGMP-VGPLAISDEVSLSLMTHIRN
Q9I394_PSEAE/414-509 GFVVQRVLAMIVNLACDIAQQGIASVEDIDQAVHLGLGYP-HGPLEWGDRLGPRRLLSILQ
Q9K4C6_STRCO/186-282 GFVTTRLISALVVEAAKLYESGVATAEDIDLACKLGFGHA-MGPLATADLTGVDILLHAT-
Q9KBD3_BACHD/187-283 GFIVNRIMIPQFIEAIKLLEEGVASAEDIDKAVTLGLNYP-MGPFTLQDYAGVDIGLHVME
Q9KGA8_BACHD/186-281 GFVTSRISALIGNEALHMLQEGVASAEDIDKAVRLGLNFP-MGPLELADLVGLDARLNNLR
Q9KIE3_STRHY/181-277 GFVTSRLLHPMINDAARIVQEGTASVEDVDALMTGCLGHP-TGPLRTADLIGIDNLVDALW
Q9LDF5_ARATH/187-283 GFVVNRILMPMINEAFHTLYTGVATKEDIDSGMKHGTNHP-MGPLELADLIGLDVCLSVMK
Q9RUA4_DEIRA/490-582 GFVGNRMVHRYGDEARKIVEEG-ARPEDVDAAMNA-LGLP-MGPFQMSDMAGLDIGYSIRQ
Q9RZ10_DEIRA/239-335 GYILNTLLVPLLGAALELVVKGIADPQTVDKTWMIATGAP-RGPFAFLDVIGLTTPYNINM
Q9UX37_SULSF/193-287 GFIGNRLAFALFREAVNLVDEGVATVEDIDKVMTAAIGLR-WAFMGPFLTYHLGGGEGGIE
Q9V397_DROME/556-651 GFYTTRILSTMLSEAIRLLQEG-VDPKDLDQYTKK-FGFP-VGAATLADEVGIDVGSHIAV
Q9VXI1_DROME/191-282 GFALNRIQYAILNETWRLVEAGILNVKDIDSVMSNGLGPR-YAFLGPLETAHLNAEGMAN-
Q9X7N8_STRCO/504-604 GFFTSRVIGHFINEGVAMVGEG-IEPASVEQAAAQ-AGYP-AKVLSLMDELTLTLPRKIRE
Q9XA30_STRCO/190-287 GFVVNRVARPFYAEALAAYEARAADPATVDAVLRESGGFR-MGAFELTDLIGQDVNESVTH
Q9XA30_STRCO/413-504 GMIVARTVARIIDLAFDAVAKGVAAPEDVDTAMRLGVNYP-LGPFEWSRRLGDTWAYYLL-
Q9Y1C5_APIME/7-98 GFVLNRIQYAILNEAWRLVADGILNAKDVDAVMSEGLGMR-YAFLGAFEAAHLNAEGMKK-
Q9YBW6_AERPE/198-292 GFIVNRILGRLMESACLLVERGGYTVVQVDATAKYLLGLP-MGVFELADYSGIDVFYYVFE
Q9ZBJ9_STRCO/196-292 GFVADGLLFGYLNQAAAMYEANYASREDIDAAMRLGCGLP-MGPLALLDLVGVDTARTVLE
Q9ZBJ9_STRCO/502-598 GFIVNALLFPYLNNAVKMVQEHYATLDDIDAAMKLGGGYP-MGPFELLDVVGLDVSLAIEK
AIM1_ARATH/492-585 ------PIYAKVYGDR---MFR-SPMTELLLKSGRNGKINGRGYYIY
CRYL1_RABIT/192-283 --------YCDRYSEG---MKR---VLKSFGSIPEFSGATVEKVNQA
ECHA_HUMAN/544-639 -------DLGKVFGERFGGGNP--ELLTQMVSKGFLGRKSGKGFYIY
ECHP_CAVPO/481-585 GQGLTGPSLQGTAPARKRGNARYSPIADMLCELGRFGQKTGQGWYKY
ECHP_HUMAN/478-582 GQGLTGPTLLPGTPARKRGNRRYCPIPDVLCELGRFGQKTGKGWYQY
FAD3_RICPR/193-295 S----SLISALPKSDDYHRIYTNTKVFDKMIEHNLIGRKGEGGFYRL
FADB2_MYCTU/190-286 -------KMFEEFKEP---HYGPPPLLLRMVEAGQLGKKSGRGFYTY
FADB_ECOLI/496-592 -------VMAAGFPQRMQKDYR--DAIDALFDANRFGQKNGLGFWRY
FADB_PSEFR/497-592 -------VMAEGFPDRMKDDRR--SAIDALYEAKRLGQKNGKGFYAY
FADJ_ECOLI/492-586 ------PVLEAAYGER---FSAPANVVSSILNDDRKGRKNGRGFYLY
FADJ_VIBCH/497-590 ------PILVKELGPR----FQGPDVFDVLLKDNRKGRKSGKGFYTY
HBD_BACSU/186-282 -------VLHSGLGDS---KYRPCPLLRKYVKAGWLGKKSGRGFYDY
HBD_CLOAB/184-280 -------VLYSETGDS---KYRPHTLLKKYVRAGWLGRKSGKGFYDY
HBD_CLODI/183-279 -------VLYTEFGDT---KYTAHPLLAKMVRANQLGRKTKIGFYDY
HBD_THETC/184-280 -------VLYEEYGDS---KYRPHPLLKKMVRGGLLGRKTGKGFFEY
HCDH1_CAEEL/199-296 -------GWAAKYPEV--QLFEASPLVDKLVAEGKLGRKTGDGFYSY
HCDH2_CAEEL/211-308 -------GWHAQYPEE--VAFTPSPLLNSLVDSGKNGRKSGEGFYKY
HCDH_HUMAN/216-313 -------GWHEMDAEN--PLHQPSPSLNKLVAENKFGKKTGEGFYKY
LCDH_PSEAE/188-280 -------HFMAQ-FGP---ALQ---LPWTYLPAPELTEALIDRVVEG
MFPA_CUCSA/495-588 -------QFVQAFPER---TYK-SMLIPLMQEDKNAGESTRKGFYVY
O17612_CAEEL/535-630 -------YLGTALGPRVHGGSV--DLLSELVRAGHKGRKTSKGIFVY
O28011_ARCFU/200-294 --------YYAQTISP---DYEPPKFLEEMVKANKLGRKTGQGFYDW
O29062_ARCFU/188-281 --------YFLEFFDD---HYR--RLWSDLANWSEYPEGSFDAILKS
O29077_ARCFU/192-288 -------YLYNETKEP---HYAAPNTLKKLVLSGYVGRKPGSRGGWY
O29090_ARCFU/181-277 -------SFREYYGDKYRGIRAMDFFMEKMVEWGKLGKKSGEGFYKW
O29143_ARCFU/183-276 ------EVRKRGFEVE---VPG---LLERMVLEGRLGMKTGKGFYEY
O29237_ARCFU/186-280 --------YFARAVSP---EYEPPERVRKMVEEGRLGRKTGRGWYDW
O29815_ARCFU/186-282 -------AMFEATKDP---KWAPPKLLVQLVDAGYLGDPSLKPGSKG
O29956_ARCFU/188-278 ---------QQWDIVP---QSK---LLEEKFKANELGMKTGKGFYDW
O30218_ARCFU/190-288 V----LEYYRQTLGES----YRPSPLFERLFKAGHYGKKTGKGFYDW
O44608_CAEEL/202-299 -------IFRETIPGD--ARFAPIPLMDKLVAEGKLGRKTKQGFYTY
O53872_MYCTU/508-607 AT---RKGVEDAGGTYQPHPAEA--VVEKMIELGRSGRLKGAGFYEY
O57660_CHICK/551-646 -------DLGKAFGERFGGGSI--GLFKLMVQKGFLGRKAGKGFYIY
O84980_PSEPU/190-287 ------SVFDAFYGDF---RFQPSLVQKELVDAGRLGRKTGQGFYSY
O88051_STRCO/206-302 ------YSMYEEYKEP---LYAAPPLLQRMVDAGRLGRKSGSGFYAY
PAAH_ECOLI/188-285 ------SVFNAFWQER---RFLPSLVQQELVIGGRLGKKSGLGVYDW
Q53926_STRCH/176-278 KW---LEHLGSGLEQGWRGLGQ-PALTPQAVEALVAQTEAAYGHRPY
Q978T2_THEVO/186-280 -------YYAKELSPD---YAK-CQVYNKLYNEKKLGLKTGEGFYKW
Q979P5_THEVO/219-314 -------VFEKTYGDQ---YKT-SQLIRRMSEAGKLGRKTKEGFYKY
Q97AH0_THEVO/189-285 -------YLYEETGDP---QFIPPISLKQMVLNGYIGDKKVKFGSKG
Q97UK9_SULSO/186-281 -------VIVSSGTAQ---DVK-CEMYKRKFEAKELGVKTGKGFYNY
Q97UX0_SULSO/186-280 -------AMMER-GFK---AYP-CKTLEEMTKKGDLGVKSGKGFYTY
Q97VU5_SULSO/190-286 --------SREELGIR--DDIPICSLIEQKFKNNELGVKTGKGFYTY
Q988C8_RHILO/184-282 V----SSFLNADLSNR--DDVA--PMVLEKTSASKFGIKSGEGMFCY
Q98BD2_RHILO/509-606 QTI-RDLGDKAVDPEQ---MAL---INTMVDDHGRFGRKNGKGFYDY
Q98EK7_RHILO/475-561 ---------KAR-GLT----AV---IADTLCEQGRFGQKTGRGFYLY
Q98LG2_RHILO/186-278 --------YVDRYQGI---YSN---IFPQMLRRVDWAGEVMATVEAE
Q99WZ1_STAAM/189-287 -------GMQQVPEET--PYFHDVKIVNTLFDNGALGRKTKQGFYKK
Q9A3L4_CAUCR/483-581 TS---SSTVREVLCEM---DRRGQKNGKGFYDYDENRNAKPSPVVEE
Q9ABZ4_CAUCR/482-579 QT---KKDLGDKFEDR---PFA-PIIEKMVVELQRFGRKNGKGFYDY
Q9ADL9_SORCE/196-292 -------VLYESFNDD---KYRPCPLLKKMVDAGLHGRKSGRGFYTY
Q9F9V1_AZOEV/190-287 ------SVFEAYFCDR---RFAPSPFQQELVAAGRLGRKSGRGIYEY
Q9HJM0_THEAC/219-314 -------VLERAYGER---YKT-SVILRRMREANRLGRKTRIGFYKY
Q9HQ61_HALSA/191-286 --------YMQDVLGT---AYEPCPVLVDHVEAGDLGRKSGAGFYDY
Q9HRI4_HALSA/190-285 -------TLHEELGDR----YKPAYLLQRKVDAGDLGKKTGAGFYTY
Q9HU01_PSEAE/190-281 --------LAGVGQDQ--PAVQ---VDNRLCEMGRFGQKSGAGYYRY
Q9HY36_PSEAE/189-286 ------SIYRQYYEEP---RYRPHPLLRQMLAAGRLGRKSGQGFYRY
Q9HY36_PSEAE/415-510 -------RLHALSGDP---RYRPSPWLRRRAQLG-LSLRQPDSPLAS
Q9I300_PSEAE/499-599 QTARDLEAEGKALPTH--PAFA--VIDLMVNEYKRPGKAAGAGFYDY
Q9I394_PSEAE/414-509 -------RLQALTGDP---RYRPSPWLRRRAQLG-MSLRAGETAAVD
Q9K4C6_STRCO/186-282 ------GNIYTESQDE---KFAPPELMRRMVDAGDIGRKSGQGFYKH
Q9KBD3_BACHD/187-283 -------YFQQEFNDP---RFTPPLLLKQLVRAGRLGKKVGAGFYDY
Q9KGA8_BACHD/186-281 -------YLHETLGEK----YRPAPLLEKLVKAGRLGRKTKQGIYKY
Q9KIE3_STRHY/181-277 -------VLHKRTGDE---RSRPCDLLLGKVREGHHGRKTGRGFYEY
Q9LDF5_ARATH/187-283 -------VLHEGLGDS---KYAPCPLLVQYVDAGRLGRKRGVGVYDY
Q9RUA4_DEIRA/490-582 -------HQAKVRGEP---EPD--GWLDRIVKTGRKGQKTQGGIYDY
Q9RZ10_DEIRA/239-335 -------ASAETNPGS---AAAAKYIKENYIDKGKLGTATGEGFYKY
Q9UX37_SULSF/193-287 ------YFFSKGFGYG---ANE---WMHTLAKWDKFPYTAVKKVLEQ
Q9V397_DROME/556-651 -------DLAKAFGERFSGGNL--EVMNDLVLAGFLGRKSGKGIFLY
Q9VXI1_DROME/191-282 --------YFERYSNT---IYA---VSETMGPTPKMEGPVAVEVAKQ
Q9X7N8_STRCO/504-604 ET--KRAVEEAGGTWA--AHPAEALIDRMVDEFGRPGRSGGAGFYEY
Q9XA30_STRCO/190-287 ------SVWQSFFQDV---RFTPSLAQRRLVESGRLGRKSGQGWYDY
Q9XA30_STRCO/413-504 ---------ADVHEWE--PSGR---CAPSLALHRHAEAAEDREGAAS
Q9Y1C5_APIME/7-98 --------YCETYKNS---IYD---VSMTFGPVPKFEGEMAEKISNE
Q9YBW6_AERPE/198-292 -------AMSRR-GFR---SAK-CSIFEEKFKAGEYGVKAGKGIYSY
Q9ZBJ9_STRCO/196-292 -------AMYAASRDR---LHAPAPILRQLSEAGLTGRKAGRGFYTY
Q9ZBJ9_STRCO/502-598 -------VLHREFRDP---GLAPAPLLEHLVAAGCLGRKTGRGFREH