The sequences which have been used as reference for the generation of profiles for the family 3H are highlighted in red. The profiles and the reference sequences for this family are given in a tar zipped format (Profiles are in ASN.1 format).

Download the tar zipped file.
Click here for help on generation of RPS-BLAST databases from the files given in above link

A0Q3T7_CLONN/72-169                 IAVH--H-EREDIDEEMQCIVK-YGGIIKDVIVEHP-FYG-EIKAMM-MVKNLYDVQKFIK
A1HQE1_9FIRM/73-170                 LACR--H-GRDNLAEELATIID-HGGKVLDVIVEHP-LYG-EIRANL-MLASRRDLAEFLR
A3CNJ3_STRSV/72-169                 FKVQ--H-RAEDMEAELLAIVD-NGGRVQTILVEHP-VYG-EIQTYL-NLTCRRDVQHFLQ
A3IFL8_9BACI/77-174                 LPCI--H-TSEQTEDELMTIVD-CGGTVKNVMVEHP-IYG-ELTASI-MVSNRHEVKQFIE
A4EA26_9ACTN/74-171                 VKVR--H-SVEQAGDELTSIVD-AGGAVLNVIVNHR-VYG-KITADL-DIRNRRDVERYLR
A4W490_STRS2/77-174                 IACQ--H-GPEEVEKELTILLE-GGAQILDVEIEHP-IYG-LLSGKL-NIASLEDRDHFLD
A5KMG5_9FIRM/70-167                 FKVK--H-TDAQVEEELTEIID-LGGIVRNVMVNHR-VYG-HMEAEI-NITSRRKVTEFMD
A5M3F4_STRPN/72-169                 FKVK--H-EVEEIGQELLAIVD-NGGHVQNTLIDHP-VYG-EIETLL-KLSCRRDVQHFLE
A5N465_CLOK5/72-169                 IAVS--H-KTTEIEDELKAIVK-FGGKVQDVIVEHS-IYG-EIKAML-MIKTLYDIENFMN
A5Z8H9_9FIRM/70-167                 FKVK--H-SAEKMLDELNLIVD-CGGKVEDVFVYHK-LYG-VIRVEM-NIKSRMDAKRYVD
A5ZYB7_9FIRM/70-167                 FKVR--H-SQDKAAEELNLIVD-CGGHVKNISISHR-VYG-RVSAEM-DIRSRQDVSEFVQ
A6BFL5_9FIRM/70-167                 FKVQ--H-TDEQLEEELNTIVD-LGGCVDNVMIHHR-VYG-KMEAEL-ALSSRRKVGAFME
A6CUE9_9BACI/80-177                 IACK--H-TPERTEEELNLLVD-HGILVKDVRIEHK-VYG-DLTASI-MVSNRQQVKQFMD
A6LJ67_THEM4/69-164                 VAVK--H-GEEEIYDELFRIVS-AGGKVIDVIVEHP-IYG-EITGRL-DIETLDDIAKFMA
A6LPB9_CLOB8/71-168                 IAVS--H-TEDEMIEELSIVIK-YGGMIEDVVVEHP-LYG-EIKGML-MIKNYNELNKFIE
A6TJ95_ALKMQ/72-170                 VVSK--HENYEEMEEELQIMID-HGARVVDVIVEHP-LYG-EIRGML-DISYGQELKMFMK
A7B891_RUMGN/70-167                 FKVN--H-TDEELEDELCTVVD-LGGKVVNVMVNHR-VYG-HMEAEI-NITSRRKVMEFVE
A7FQ37_CLOB1/72-169                 IAVC--H-DSKDIKDELEVIIK-FGGIVEDVVVEHP-IYG-EIKAML-MIKSMYDIDNFIK
A7HKR0_FERNB/67-163                 IAFK--H-TADDIYDELKTIVE-NGGKVIDVIVEHP-IYG-EITGRI-DVSSIDDVEKFIS
A7VCG7_9CLOT/79-176                 FKVR--H-TAEEIEKELQIIVD-NGGRILDVFVYHK-IYG-VVKAPM-NIKTRKDIYEYVK
A7Z778_BACA2/81-178                 VACL--H-GPERTEEELALIVD-EGVTIKDVIIEHP-VYG-DLTAAI-RVSTRKEVKQFMD
A8F6K0_THELT/73-170                 VAVK--H-GTDEIMEELMCVVK-NGGRVVDVIVEHP-IYG-EIRGMV-DVSSEEDVIKFVN
A8FFS5_BACP2/81-178                 IACK--H-DPVRTEEELTLIVD-FGVTVKDVMIEHP-VYG-ELTASI-RVSTRKQVADFVH
A8MEB0_ALKOO/72-170                 IACK--HEGYSPIREELQIMLD-HGATIVDVIVEHP-LYG-EITSQL-NITNKIDLDGFIE
A9KK86_CLOPH/72-169                 FYVK--H-STEQIEDELGSIVD-LGGKILDVIVSHA-IYG-TIEADL-IISTKQDVIDFVT
NADR_BACSU/81-176                   IACL--H-GPERTEEELQLIVD-EGVTVKDVKIEHP-VYG-DLTAAI-QVGTRKEVSHFIK
NIAR_THEMA/75-172                   VAVK--H-APEEIKEELLCVVR-NGGRIVDVIVEHP-VYG-EIRGII-DVSSEEEVLKFVN
O27326_METTH/183-286                ITVK--H-DVDDIGREARIILK-HGCTLEDIEYHLP-EFKEPLVRKI-GVSDGGELERFLK
O27326_METTH/316-420                IVEN--H-GVDDIRREAEIIIN-HGCTIEDIEYYLP-GFSEPLRRNV-GVSSMEEIDSFMK
O27326_METTH/442-543                MLLK--H-DLGNMDDK-EIIIR-RGGRILDSKHYLP-GVKQVVTRNL-NIRNMDDLKRCME
O27863_METTH/211-315                VTLQ--H-PVERLGDVIDIIIKRHGGRIVDVSYPIP-GFSQPLKREV-NVYDPAEAERFVK
Q03AX9_LACC3/70-167                 LPCK--H-TPAQTAEELQLILE-NGGWIEDVLVEHP-LYG-QLRGQL-NIRTVADMKLFMS
Q03HK7_PEDPA/69-166                 IVCR--H-FPDQAEREMELIVK-EQVTIKDVMIDHP-LYG-QLVGQI-RVQNSNDVKQFMQ
Q03KY0_STRTD/72-169                 FKVN--H-TVNNMEEELLAIVD-NGGRIQNIMIDHP-AYG-EIQSLL-KLTCRRDVRHFLE
Q18C96_CLOD6/76-175                 IKCK-NHKDSKEIYDELKIIVD-LGGIIKDVIVNHP-TYG-QITAEL-NIYSKMDIDNFMK
Q2B6G2_9BACI/80-177                 VACS--H-SPDKTEEELNLLVD-HGATVKDVKIEHP-VYG-DLTASI-MVSNRREVKQFLE
Q2NH96_METST/208-312                VFVR--H-TVDDIDLEREIITK-HGGRITDISYYIP-EFKEPLTRIVENYEDNTSSGKFIN
Q2RM93_MOOTA/70-168                 FACR--H-DLAGLEQELLLMVD-YGGKVIDVIVEHP-LYG-EIRGYL-MLSSRYEVRKFVT
Q38VE6_LACSS/74-172                 LVCQ--H-TQAKTRAELTAIVQ-NGGRVIDVTVDHQ-VYG-EITGQL-GINNLTDVKGFIQ
Q3D2C3_STRAG/73-170                 LVCQ--H-GIEQTEEDLEIILR-YQGIIMNVEVEHP-IYG-MLTAPL-NIQSQKDIDNFTA
Q4EQE4_LISMN/76-173                 IAVK--H-TKEQAAEELNILVD-HGVSVVDVIVDHP-IYG-EITASL-HLKSRFDVEKFIK
Q5KWP8_GEOKA/80-177                 IACF--H-TPEQTKEELYLLVD-CGVTVKDVKIEHP-VYG-DLTASI-MVSNRLEVDQFIA
Q5WHS5_BACSK/79-176                 IAVQ--H-RPEDTREELYTFVD-HGLTVINVSIEHA-IYG-ELTGAM-HISNRQEVDAFCA
Q65GN0_BACLD/81-178                 IACD--H-EPEKTEEELNLIVD-FGVTVKDVTIEHP-VYG-DLTASI-RVSTRKEVADFVK
Q817V4_BACCR/82-179                 IVCQ--H-KPAEVRQELTMLVD-HGVTIKDVKVEHP-VYG-DLTASI-MVSNRFDVEQYLQ
Q839C4_ENTFA/71-168                 IACQ--H-TPEQTREELSVIVA-KGGEVVDVSIAHP-LYG-ELIGSL-RIQSEKDIDKFMD
Q899T1_CLOTE/72-169                 IALS--H-DRYEIEDELKTIVK-YGGVIRDVIVEHQ-LYG-EIKAVL-MVKTIDDVEKFVK
Q8DVX8_STRMU/75-172                 LVCK--H-GPKEVRLELETIVK-NGGKILDVEVEHP-IYG-MITAPL-NIENQDEIDYFMD
Q8P0C2_STRP8/73-170                 IVCQ--H-NVEETKKELEIILA-HQGIITTVEVEHP-IYG-MITAPL-NIKTHSDVTNFMS
Q8RCB6_THETN/72-169                 FAVK--H-GYERTEEELNLIVD-NGGKVLDVIVEHP-YYG-ELKGLL-MLSSRYDVAKFME
Q8RH98_FUSNN/70-167                 IKVK--H-DDSEIRNELNAIVD-LGASVEDVFVIHK-TYG-EIRVKL-DIKSRRDVDLLVE
Q8TH03_METKA/208-309                VVIKSVH-SLEDSVREAEIIRE-NNCRLIDIGFPIP-GKRDVIKVSF----RRDPVDEWEE
Q8TV51_METKA/261-360                VTVR--H-PLEDTFREFREIIR-HGGIVVDVRYHIP-SLPEPLVKDL-WVEDESDVKRRLE
Q8TVH7_METKA/162-267                VTVR--H-DLDEVEKEWRTIAVENGGTILDVRFHVPESPEEPIVKEL-PVESPEDLQRRKE
Q8TXQ4_METKA/253-356                VTVR--H-SVDEISDVMWIIIG-NGGVVQCVEYYTP-PLKSPIRRDV-VISSMDEVMRFVK
Q97N29_CLOAB/72-169                 LAVV--H-ERNAIEDELNSVIK-FGGVVEDVIIEHP-LYG-EIRGIL-MIRTLFDVKNFMN
Q9KDJ7_BACHD/79-176                 VACQ--H-GPADMKDELLTLVD-HGVLIKDVTVDHP-VYG-DITASL-HLKSRKDVALFCK


A0Q3T7_CLONN/72-169                 NLNSN-KAQ----PLLALTK-GVHLHTIEVDKKENMDKIIEELSSKGFII
A1HQE1_9FIRM/73-170                 KLEES-GAK----PLSVVTG-GVHLHTIEAPSPQVLAEIEAALRQQGILL
A3CNJ3_STRSV/72-169                 QVASC-AFR----PLSELTD-GVHYHLVQADSQQDLDYVESALRDLGFLQ
A3IFL8_9BACI/77-174                 RVNAT-QAN----YLSALTG-GIHLHVITAPSVEVLTLIEQALHKKGYLV
A4EA26_9ACTN/74-171                 DIESG-KSF----PLLTVTS-GYHFHRIAAEDEQTLDEIEAMLKEKGYLA
A4W490_STRS2/77-174                 ALGQY-QGV----LLSNLTE-GVHTHTVSFPSVQAYNELSAALKHAGILL
A5KMG5_9FIRM/70-167                 DIQNG-KSS----PLKNITS-DYHYHKVEADSEETLDLIEDMLRNKGFLV
A5M3F4_STRPN/72-169                 QVEHS-DFK----PLSELTD-GVHYHLVEAETQQDLHYIEEALDQLGYLV
A5N465_CLOK5/72-169                 KVKEH-KAE----PLLILTG-GVHLHTIVAENYDILENIKGELKNKNYII
A5Z8H9_9FIRM/70-167                 GIKGG-VSV----PLEQITS-EYHYHTVTADSVETLNIIQDQLDKQGYLV
A5ZYB7_9FIRM/70-167                 ALQNS-HST----VLSNATS-GYHYHLVEAASEERLDLIEEQLKKAGFLA
A6BFL5_9FIRM/70-167                 DIRSG-KSS----PLKNITS-NYHYHKVSADSEETLDLIEQELREKGFLV
A6CUE9_9BACI/80-177                 KIKET-NAS----YLSELTN-GIHLHTISAPNDKAMADAERALKEAGFLI
A6LJ67_THEM4/69-164                 LMQSS-NAT----PLLRLSG-GVHIHTIETPNKETMKKVLEAISK--YLL
A6LPB9_CLOB8/71-168                 KYNEQ-KAK----LLSALTN-GVHLHTIAAETQDDIDLIILELKKNNFIV
A6TJ95_ALKMQ/72-170                 KIRTE-KAE----PLSSLTY-GIHIHTLEVPSEESFNKMNQALMEKGYLI
A7B891_RUMGN/70-167                 DIKRG-KSS----PLKNITS-NYHYHLIEADSEETLDLIEEALRQKKFLV
A7FQ37_CLOB1/72-169                 NIQNN-KAE----PLLILTG-GIHLHTISSDNEDIMNKIIEELNQKNYLV
A7HKR0_FERNB/67-163                 LLKAS-NTK----PLLEISG-GIHLHTIEAPDEETMERILKAVEKYR-LI
A7VCG7_9CLOT/79-176                 TLSSG-KSS----PLLKITD-NYHYHTVQADSEDILDNIQKDLEECGFLA
A7Z778_BACA2/81-178                 HINST-NAA----YLSQLTG-GVHLHTLSAPTKERIDQACQALDDAGILI
A8F6K0_THELT/73-170                 LMKMT-KTE----PLLALSE-GVHLHTIETHDRESLEKILHELRKKGFLI
A8FFS5_BACP2/81-178                 HISNT-GAS----YLSELTD-GVHLHTLTSYSQKQLDQAIQALDDAGFLI
A8MEB0_ALKOO/72-170                 NITKK-KAE----PLASLTD-GIHIHTIEIANEKIFEDLKKALDEKGYLI
A9KK86_CLOPH/72-169                 KVNQK-QTV----PLKELTG-GNHYHTVEADDESSLDRIESVLKEKGYLI
NADR_BACSU/81-176                   KINST-NAA----YLSQLTD-GVHLHTLTAPDEHRIDQACQALEEAG--I
NIAR_THEMA/75-172                   LMEMA-KTE----PLLTLSG-GVHLHTIEAPDEETMERIMRELKKKGFLI
O27326_METTH/183-286                ILERDPARKSSLKRIYESVS-GIHSHWISGPDRESIDAVIDELKSEGILL
O27326_METTH/316-420                TLKSEPRKLESLDRLYTLSGGGIHSHRISGPDSKSLELVERELREEGFLI
O27326_METTH/442-543                ELENP-DARRSLKALYSISR-NIHSHTVAAADIKIIMKIEDDLRKRGILL
O27863_METTH/211-315                RLNESPKRKRDLERLYTLSN-NVHSHRICAPDPETLQEILRELEESGLVY
Q03AX9_LACC3/70-167                 RLSRY-HGR----LLSELTG-GIHLHTISVKNERDMPKIKAALRQAGMLY
Q03HK7_PEDPA/69-166                 HVREA-KGH----LLSELTD-GIHSHTLAADKMENIEKAKEQLKKVGILY
Q03KY0_STRTD/72-169                 QAASS-DFR----PLSELTN-GVHYHLVEADSQQDLDYIEEALDNLGFLV
Q18C96_CLOD6/76-175                 KVETN-EFK----QLSVLTE-CSHIHTIEAIKEETIEAIVKELKDNGILS
Q2B6G2_9BACI/80-177                 KIRKT-NAS----FLSELTG-GFHLHTITAPSEAILDAAEQALSEAAFLV
Q2NH96_METST/208-312                VIEHETKQKESLGTLYELSN-NIHSHHLYAPDENKLNDIIQELKENNLLY
Q2RM93_MOOTA/70-168                 DLKAS-DAR----PLYTLTGNGVHLHTVEASRQELLDTIEDRLARAGFLL
Q38VE6_LACSS/74-172                 KIKKYPEQK----LLSTLTG-GIHLHTIECASEQDFERIKAALSALDILY
Q3D2C3_STRAG/73-170                 KLKVS-NAE----LLSSLTD-GLHTHMISCQDQSVFDQICEALKKAGILY
Q4EQE4_LISMN/76-173                 KVQTT-GAT----MLSGLTD-GTHLHTIEADTKEQLEQAIEALEKAGFLI
Q5KWP8_GEOKA/80-177                 KIEAT-KSS----YLLQLTD-GTHLHTLEADSPVKLDAACRALKQAGFLI
Q5WHS5_BACSK/79-176                 TLAKT-KAS----LLSELTE-GVHLHLVEGQNEAQVEKAIAALREKSFLL
Q65GN0_BACLD/81-178                 KISST-NAA----YLSQLTN-GIHLHTLEADDEEKIEQACGALQKAGILI
Q817V4_BACCR/82-179                 KIENT-NAS----YLSQLTD-GIHLHTIEADSKEKLDAACEALDKAGFLV
Q839C4_ENTFA/71-168                 KYQKE-HAT----LLSVLTG-GVHLHTIRCADEETFQEIKEALRKKSILF
Q899T1_CLOTE/72-169                 KFNEY-KAE----PLLKLTN-GLHIHTILTETKEQMDNIIYELDKKGYLI
Q8DVX8_STRMU/75-172                 KLSCY-KGS----LLSSLTD-GIHLHTLSCRDKETFEKITEALEQEHIVF
Q8P0C2_STRP8/73-170                 KLSQS-KAE----LLSSLTE-GLHSHLISCPSQEAFLAIKHDLELAGILY
Q8RCB6_THETN/72-169                 VIKKE-KAA----LLSSLTG-GVHLHTVEAESDEALDRIEKALRDRGFLI
Q8RH98_FUSNN/70-167                 NINSK-LSK----PLKNLTD-NYHYHTIIAENENIFKEVEDKLKELGILL
Q8TH03_METKA/208-309                ILNNE-ESRQYFKHLYSASN-NVHYHKISAPDEESLHRAIEKLREEGFKV
Q8TV51_METKA/261-360                MHEDS-ETREALERLHRMSD-DVHSHRIIVRREEDKEKIVEALRR---LV
Q8TVH7_METKA/162-267                LLGTSEEFRSMAEALHELCR-GAHSHRVFVADPSDKERIVKELEKLGFLI
Q8TXQ4_METKA/253-356                SLEKYPERKRTLEDLYRVSE-NVHTYYVIVHNEEERERILRELDRRGYLV
Q97N29_CLOAB/72-169                 KIRDY-SAE----PLSILTG-GVHLHTIRTDNEEDMNNIVDELTRKNYII
Q9KDJ7_BACHD/79-176                 RMEES-NGT----LLSTLTK-GVHMHTLEAESEAILDEAIRALEEKGYLL