The sequences which have been used as reference for the generation of profiles for the family 3-alpha are highlighted in red. The profiles and the reference sequences for this family are given in a tar zipped format (Profiles are in ASN.1 format).

Download the tar zipped file.
Click here for help on generation of RPS-BLAST databases from the files given in above link

A0KQK5_AERHH/172-218                ELTVKRTADILFNQLRN--EADLLLLLEN-PALSPNWRKHAADWLEHGVV
A0PSE6_MYCUA/178-221                DVTIGLVFRARMAEP-----DLLPKLLAV-DALPAEIKADVRRRLASNTG
A1BAH6_PARDP/193-239                DWTLRRLWHALYVDRLN--LGELQGIAAL-DILAEGWRRYAVRRLESGRV
A1JT37_YERE8/167-213                DICVSEAIAIAWHMPFD--EEQYRRLLSV-SGLSASWSKTMLTRISQGKI
A1REJ5_SHESW/172-218                DISVAEAMSLYFSPTFN--ASAYDRLASC-EGLALSWINSLQRRLASQTV
A1SBG6_SHEAM/171-217                DISVANAMQCYFAPEFN--ETGYRRLLAC-PGLAQSWRNSLEKRLASGKI
A3I477_9BACI/173-218                QVSVLYCNEVYF-KNKD--ADAMKHIREV-DALAEDWKQKLEKRIQVLQS
A3KU09_PSEAI/174-219                DWSLLRLSEVLFDRRAD--AELLRQCLAL--PLTPSWRRTLERRLEKGQV
A3LHY1_PSEAI/169-215                ELTVARLLQWYFGDPLE--PLGLRQMMAC-DALSQRWRKTAAKRLSSGVV
A3PH72_RHOS1/169-215                DWTLRRLWQALYVDRMN--LAELDGMAAL-DVLAESWRNHAVRRLESRRV
A3Q907_SHELP/171-217                DISLREAMSIYFSPTFD--AGAYDRLASC-DGLAKSWVNSLQRRLESRKI
A3RW56_RALSL/121-166                QWPLARVLDVLYRNMLD--TQALGEMLAL--PLTPSWRKLVEHRLARGEV
A3ZWW4_9PLAN/183-229                DWTIARLNQLFYHDRRN--VADAAILAAS-PVLAESWRSEFRKRVEKAAT
A4MXM3_HAEIF/173-218                QITIRHLNRLLSAPE-N--EAELDAALEI-EVLAEAFKRSIRSQISKFKQ
A6WY04_OCHA4/172-218                NWTLHRVWHLLYVDTLN--YDELSVMAEL-SHLADSWKRYAVRRLENRKV
A7HE69_ANADF/178-224                RMTVARVNALLYLPGHL--RADLERALRI-PALSPGWRGSFQAMLDHAGA
A7MNF7_CROS8/168-214                AISVREAAAIAWHTPFD--DEQYHRLLSA-GGLSASWAKTLQNRRLNGKI
A7Z2E3_BACA2/172-218                SISVWYANEVKYRDSGN--LSAIEEILRE-EALSESWRESFLKKRDRLTN
A8G1N5_SHESH/173-219                DISVREAMTLYFAPEFD--ARAYDRLSSC-EGLAASWVNSLQRRLDTQKI
A8HA46_SHEPA/173-219                DISVAEAMQIYFLPEFN--AEQYKRLMDC-QGLAVAWVNSLQRRIENSAI
B1KP15_SHEWM/173-219                QMSVRDAMAIYFAPEFD--ASAYDRLISS-EGLATSWVNSLQRRLDSQKI
B1ZJZ1_METPB/170-216                DWPLSRLLHHLYVDRLD--TAALRAIAAL-APLAESWRRIAARRLASGAV
B2JJN1_BURP8/183-229                QWSVERLLRVVYVDRDD--RQSLEDMAKL-DALSPSWRKTATRRLESGEV
C1APE1_MYCBT/201-244                NVTVGLVFRARTSES-----ELLPQLLAA-DALAAELKAYARERTPSPPP
O86804_STRCO/189-233                EVTVALQFRAVTTQR-----ELLPRLLAAGGALHPEALATARKYVAEYGA
Q089X4_SHEFN/172-218                DISVAKAMQIYFLAEFD--AEQYQTLLGC-EGLAQSWVNSLQRRLDLQSI
Q0HQ73_SHESR/172-218                DISVAEAMALYFSPEYD--AKAYDRLASS-EGLAQSWVNSLQRRLATQQV
Q0KAF4_CUPNH/183-229                RWSLQRLLQVLYVDRLD--YAALAEMSEL-APLAENWRKLARQRVERREI
Q0SZA1_SHIF8/168-214                DVTVQEAAAIAWHMPFD--DDQYHRLLSA-AGLSKSWTRTMQKRRLSGKI
Q12QM5_SHEDO/173-221                DISIKKLFQAYFDRNYVGLERVFSKALDL-ETLAPEWKDKLAKRLSITSD
Q1AU76_RUBXD/170-216                AVSVGEANRVMHRDRDD--AEGMGRLLAA-PGLPPSWHAAFERRLAGVGE
Q1IC43_PSEE4/174-219                EWSVARLSAVLFDKRLE--PGLLRECLEL--PLVPSWRRTLEKRLEQHQV
Q1IN89_KORVE/170-216                HVTVADIDALLYLPGHS--REVLKRALQV-PALSNGWKSSLEAMLNSDQP
Q1LN13_RALME/179-225                QWTLQRLLHVLYVDRLN--DTALAEMADL-APLAESWRKLARQRVASHVV
Q2BR19_9GAMM/32-77                  EWTVSRVMQLIFSGELN--PEYLRPALEL--PLPDSWRSLIEKRLETGIV
Q2P1S8_XANOM/182-227                QWTLSRLQQVLYARQVD--VAAVTAVLQL--PLVPSWRALFERRLQRSEV
Q470H9_CUPPJ/185-231                DWSLARLLRVLYVERLD--FTALAEMAEL-PPLAENWRKLARQRVARHEV
Q4L8J7_STAHJ/171-217                RLSVQELNDIYYNDRKN--VSRLKYALQN-PYLSEMRLAKLQKLYDNAMN
Q5KZG9_GEOKA/168-214                ALSIAYINHIYYHERDN--AAAIKQIASH-PALSASWREAFQKRLSERTR
Q5WKH1_BACSK/172-218                KVSVLYVCDTYFRKPTD--KQAMERILAV-DALADEWKGKMRKRLEKLEA
Q63BD7_BACCZ/172-218                GVTVAFANRIMHKEKQN--LEGAKRILEV-HALSTSWRNTFEKRMRGEEM
Q65F28_BACLD/171-217                GITISYANRIKHHEKND--IEGIKKLLEV-EELSANWRASCLKRLNGFEP
Q7NA69_PHOLL/167-213                DVFVREAIAIAFNMPFD--EEQYRRLMSA-AGLSASWSLTMQKRVMFGKI
Q7NRM6_CHRVO/175-220                EWTLARLVEAFYRRGLE--RELLLEIARL--PLVESWRALIEKRLESGQL
Q813L5_BACCR/172-218                GVSVAFANRIMHKEKQN--IEGVKRILEV-NALSCSWRKSFEKRISGEEI
Q8CRC7_STAES/171-217                RLSVKDLNHLFYNERNN--LRLIYHALRN-PYLSPDRKKKLQKMKTRAEN
Q99RT6_STAAM/171-217                RLSVQQLNDLYYNDRQN--QDMLRYALNN-PFLSPTRRDKLQKMYNRTLK
Q9RT82_DEIRA/181-226                APTIGELFDADFAKSHD--PAELRAWLTF--PLGKRQRKEVEKWLAKAEG
YFLK_BACSU/173-219                  GISVQFANRINYHDAKN--LTAIERILSE-AALSESWRASFMKKKDRLLP