The sequences which have been used as reference for the generation of profiles for the family 3-PAP are highlighted in red. The profiles and the reference sequences for this family are given in a tar zipped format (Profiles are in ASN.1 format).

Download the tar zipped file.
Click here for help on generation of RPS-BLAST databases from the files given in above link

A4H9U1_LEIBR/8-144                  DLQQFRYVTTFANPLPWPHVRHVSVPELRHAAPDLSVMANLISGLSDCAVSLKDIREHND-
A4HUS9_LEIIN/8-144                  DLQQFRYVTAFTCPVPWTHVRHVSIPELRHEAPDLPFMASLISALSDCDVSLHEIHDHND-
B3DLZ6_XENTR/560-698                FKRTKKNYSSTMRGMPPSLKNGLVIQQEIMPRRNSLILKLKPEILQ--QVPV-MPSNGFEQ
B4JMP6_DROGR/642-755                Y------------------RRSLAVGQSKMSQLPTQVQAL--------GQSSPSRYTINPQ
B4L6R3_DROMO/637-751                Y------------------RRSLAVGGQHKLLSTTGTGGPL-------ATSSPSRYTINPQ
B4M7Q5_DROVI/636-757                H------------------RRSLAVGGHKLLASAAGGGGVGPGAGAATGTASPSRYTINPQ
B7Q8P0_IXOSC/504-643                HARRTRAYRNVWDWSGPESR--LSAQDLELFQNPLYLLRRSRELL---NAGRPVPPPLPPS
C3Z9W9_BRAFL/506-615                PPNPTNTLGSFKSRNKW-------------------------------KSKKKKQASASAQ
MTMRA_DANRE/548-685                 HRRSKKNYSSTVRGLPSLMRNGSLGPNDTLTRRNSLVLRLRSDL----SQVREQPETPSER
MTMRB_MOUSE/553-688                 QQQSLMVPGP-------PSSMWLFSRGTLTPLNQLCPWQDSSSLLAVSSHWLPRPARSSES
MTMRC_DANRE/547-680                 HQRQL--------SLPSSAFKTPTKKGFFKDETDSLKKMLRVKRISRWMGSPDSPVVASRE
MTMRC_PONAB/559-691                 HQRQL--------SLPLTQSKSSPKRGFFREETDHLIKNLLGKRISKLINSSDELQDNFRE
Q16UR7_AEDAE/529-650                LEKKLRLPPTAYRLPCIDDLKDSATHHHSSDTIT--------------SALRPSSKPTETQ
Q2XY44_DROME/628-735                H------------------RRSLAVGSKGAHGAA--------------SGVTPSRNTINPQ
Q384W0_TRYB2/6-141                  QLRAFRYIAG-TRDIPWAHLRSVNVAAHHTVAPDLQLMKNLISLVAECDVSTAVVANTSE-
Q38BT3_TRYB2/655-773                CHDVC---------------ETMKVLLESVTQDRDKLLKELEALQDVGETGRNQRTEHQQR
Q4ABQ1_BRARP/25-163                 PATSCREAGGDAMYLPQK-RDQVATAKEHSKNKCLMVSSALEQRAQPGWIASPQEIKRSRV
Q4DC75_TRYCC/6-141                  RLRAFRYATS-AREVPWNHVRSVDVAAHRVQEPDLCLMKNLISLLSDCNLASATSPTTSS-
Q5XI25_RAT/167-304                  FKRTKKSYSSTLRGMPSCLKNGLISDQELLPRRNSLILKLKPDP----PQHGDSQHSGAEQ
Q7Q0L7_ANOGA/509-654                SKDLALFINPLYQTKKAHAALTVPSASSSSSSPQNPIQNSLFNARR--AEDSNGQTIVNVV
Q8IU06_CAEEL/149-237                LFME--------------------------------------------SIKKNQPVCAHSK


A4H9U1_LEIBR/8-144                  ---------------ADILQLLQVLQACLQFSLWSQNILKKKLLEVQSTHTSEQVSAQQLE
A4HUS9_LEIIN/8-144                  ---------------ADILQLVQVLQVCLQFSLWSQNILKEKLLEVQATHVAKGVSAQQLE
B3DLZ6_XENTR/560-698                YLRDWFSKP------ADLHGVILPCLHGTHIKIWKLCYLRWTPEAQINHGGFIMAFQRISI
B4JMP6_DROGR/642-755                LFATQSTVP--------QDRYLQPRHRIIDLAVWDQCYYRWLPVLDIRGGGQPQVDLFHRL
B4L6R3_DROMO/637-751                LFATQSTVP--------QDRYLQPSHRILDLSVWDQCYYRWLPVLDIRGGGQPQVDLFYRL
B4M7Q5_DROVI/636-757                LFATQSSVP--------QDRYLQPAHRILDLSVWDQCYYRWLPVLDIRGGGQPQVDLFHRL
B7Q8P0_IXOSC/504-643                GSGDRRCAP------SEDEDLLSMDATVKALSVWTQCYFRWVPKAEVVNGDPGTLFLHNVR
C3Z9W9_BRAFL/506-615                VSFAAPSTP-------SFNGPLFPINIGAGLKLWTQCYMRWIPWAHTVGGGPPSEYFHQCL
MTMRA_DANRE/548-685                 FVRDFFSRA------VDLQGLLLPQLLPSHLSVWKLYFLRWVPEAQIPHGGPVTAFHKLSV
MTMRB_MOUSE/553-688                 LADQEWGLPSHWGACPLPPGLLLPGYLGPQIRFWKRCYLRGRPEVQMGSSALT-----VSA
MTMRC_DANRE/547-680                 FYESWQQRP------LDYHGLLLPSLDGPSVRIWMQRYLRWIPEVHIMGGGSVAIMTKLME
MTMRC_PONAB/559-691                 FYDSWHSKS------TDYHGLLLPHIEGPEIKVWAQRYLRWIPEAQILGGGQVATMSKLLE
Q16UR7_AEDAE/529-650                QQNTAST------------AFLEPQCTVRDMEIWHQCYFRWIPFLEIKNGGYPQIDLFNRS
Q2XY44_DROME/628-735                LFATASSVP--------QDRYLQPAHRIFDLQVWDQCYYRWLPILDIRGGGQPQVDLYHRL
Q384W0_TRYB2/6-141                  ---------------TDMHQLLSLLQLSLQFVLWSQSVMKGELLEKRTCDAAKRISSNSMG
Q38BT3_TRYB2/655-773                LSKGDL---------RKSVRTLLQEEGHSSNGEWFAQTSTFFPFA----SSPSKLVLKNSV
Q4ABQ1_BRARP/25-163                 GNLP-----------RNAVQVMKEQRGISSLNQTTEC--QGTIGAEVRNLSQVTLEENVLL
Q4DC75_TRYCC/6-141                  ---------------ADAYQLLSAMQLALQFALWSQSILKEQLVEKQSGAAVQQINLQYVE
Q5XI25_RAT/167-304                  YFKEWFSRP------ANLHGIILPRLSGTHIKLWKLCYFRWVPEAQINLGGSIMAFHKLSV
Q7Q0L7_ANOGA/509-654                GKLQLYFFPLNLVFNQNNEQFLEPQCCLRDIELWQQCYFRWMPHLEIKYGGMAQCDLFNRI
Q8IU06_CAEEL/149-237                FLQC---------------EFIRPPTSFCDIQLWSECYLRWIPPANGKNSGKLGEELSLDE


A4H9U1_LEIBR/8-144                  NLEKRYHTLEQEIAATHKERDMLSLGTANLR
A4HUS9_LEIIN/8-144                  NLERRYHALEGEMAALHKDRDMLSLGTANLR
B3DLZ6_XENTR/560-698                LASE--I---ELLQSRLRQYRGYPLSNATSP
B4JMP6_DROGR/642-755                LLSN--I---AKMQRCIELQSLEELPDAFYE
B4L6R3_DROMO/637-751                MLSN--I---AKAQRCIDLQSFEDLPDAFYE
B4M7Q5_DROVI/636-757                LLSN--I---AKVQRCLELQNFEELPDAYYD
B7Q8P0_IXOSC/504-643                VARD--IQFLAAQVRLLREHRRDGVEPVQLR
C3Z9W9_BRAFL/506-615                LVDE--L---HILNMKIHSLEMSKPDQHNTS
MTMRA_DANRE/548-685                 LTDE--I---EMLQNQLRQYKGAAGTANTSH
MTMRB_MOUSE/553-688                 LQDE--L---SHLQELLRQWTPRISPEDQSK
MTMRC_DANRE/547-680                 LLSQ--V---EDLKRVLEQRDPSLATQPDHP
MTMRC_PONAB/559-691                 MMEE--V---QSLQEKIDERHHSQ-QVPQAE
Q16UR7_AEDAE/529-650                VLNN--I---SKLMKVINTGNMTASNENILL
Q2XY44_DROME/628-735                LLSN--I---AKVQRCLDYQNFDDLPDAYYE
Q384W0_TRYB2/6-141                  RLEEKLEASRREQSRLREERDALKVTCRTLE
Q38BT3_TRYB2/655-773                SAAQ------QEDGRPLHGGRCPLPPGENLS
Q4ABQ1_BRARP/25-163                 KPPEWFLHEYKSLPFAGEGTDMVDKTICSVS
Q4DC75_TRYCC/6-141                  GLEKKLEKSHQEAIKLREERDNIQIASRSLE
Q5XI25_RAT/167-304                  LADE--V---DKLSRMLRQHHSGPLEACYAE
Q7Q0L7_ANOGA/509-654                LLNN--I---FKLRQNLDQSVLSEIANDHMD
Q8IU06_CAEEL/149-237                KMIE--M---AKKWNSSEWKMHLDLPEEYSS